CB290353

Overview
NameCB290353
Unique NameCB290353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 55/99 (55.56%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG FKGT+   ++  L ING  I +F +RDP+ I W D G +YVVES+GVF
Sbjct:    3 KVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFKGTVK-AENGKLVINGHAITIFQERDPSNIKWADAGAEYVVESTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.592e-24
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+ KY AYM KYDSTHG+F G I   + + L INGK +K +++RDPA IPW + G DYVVES+GVF
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHPEVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIKQ-EGNDLVINGKTVKFYTERDPAAIPWKETGADYVVESTGVF 102          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.592e-24
Identity = 57/99 (57.58%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            K+GINGFGRIGRL                NDPFI   Y AYMFKYDSTHG +KG +    D  L I+G  IKVF +RDPA IPWG  GVDYV+ES+GVF
Sbjct:    4 KIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYKGEVTASGDD-LVIDGHKIKVFQERDPANIPWGKSGVDYVIESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.080e-24
Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG F+GT+   ++  L ING  I +F +RDP+ I W D G +YVVES+GVF
Sbjct:    3 KVGVNGFGRIGRLVTRAAILSAKVQVVAINDPFIDLNYMVYMFKYDSTHGHFRGTVK-AENGKLVINGNAITIFQERDPSNIKWADAGAEYVVESTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.080e-24
Identity = 56/100 (56.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:  367 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            T+VGINGFGRIGR+                NDPFI  +YM YMFKYDS HG F+GT+    D  L +NGK I VFS+RDPA+IPWG     YVVES+GVF
Sbjct:    3 TQVGINGFGRIGRIVLRASLSNPEVQVVAINDPFIPLEYMVYMFKYDSVHGRFQGTVEA-KDGKLVVNGKEISVFSERDPAQIPWGSVEAAYVVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 55/98 (56.12%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  373 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            VGINGFGRIGR+                NDPFID  YM YMFKYDS HG FKG+I    D  L + GK I +F+++DPA IPWG  G DYVVES+GVF
Sbjct:    4 VGINGFGRIGRIVFRNALEVGGVDVVAINDPFIDLDYMVYMFKYDSVHGRFKGSIEA-KDGKLIVEGKPIHIFAEKDPANIPWGSVGADYVVESTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDP  I WG+ G +YVVES+GVF
Sbjct:    3 KVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA-ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 54/99 (54.55%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG F+GTI   D+  + +NGK I+ F++RDPA IPWG  G  Y+VES+GVF
Sbjct:    5 KVGINGFGRIGRIVFRNAIASGDVDVVAVNDPFIETHYAAYMLKYDSTHGRFQGTIETYDEGLI-VNGKKIRFFAERDPAAIPWGSAGAAYIVESTGVF 102          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.547e-24
Identity = 53/99 (53.54%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            K GINGFGRIGR+                NDPFID +YM YMFKYDS HG FKG++    D  L + GK I VF+++DPA IPWG  G +Y+VES+GVF
Sbjct:    4 KAGINGFGRIGRIVLRNALLHGDIDVVAVNDPFIDLEYMVYMFKYDSVHGRFKGSVEA-KDGKLYVEGKPIHVFAEKDPANIPWGSVGAEYIVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.633e-24
Identity = 54/98 (55.10%), Postives = 64/98 (65.31%), Query Frame = 1
Query:  373 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            +GINGFGRIGR+                NDPFID +YM YM KYDSTHGVF G I+   D  L +NGK I VF+++DP+ IPWG  G  YVVES+GVF
Sbjct:    6 IGINGFGRIGRIVFRNSVVHNTANVVAINDPFIDLEYMVYMLKYDSTHGVFNGDIST-KDGKLIVNGKSIAVFAEKDPSNIPWGQAGAHYVVESTGVF 102          
The following BLAST results are available for this feature:
BLAST of CB290353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
G3P_CHICK1.219e-2455.56Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_COLGL1.592e-2455.56Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_CANAL1.592e-2457.58Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_COLLI2.080e-2454.55Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P2_RHIRA2.080e-2456.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_PLESA2.716e-2456.12Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P_MOUSE2.716e-2454.55Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_ASPOR2.716e-2454.55Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_PHACH3.547e-2453.54Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P_USTMA4.633e-2455.10Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290353 ID=CB290353; Name=CB290353; organism=Citrus sinensis; type=EST; length=667bp
TGCCGTTAGACTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCCTTGAT
AGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAA
TGGCCTTCTCTTCTCCCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGC
GCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGC
TGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTC
CAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATT
CAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATC
ACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTG
GAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTG
GCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAA
GTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATG
ACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGG
GACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGA
ATCTTCTGGAGTCTTTA
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