CB290353

Overview
NameCB290353
Unique NameCB290353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 6.051e-24
Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+  Y  YMFKYDSTHG FKG I V D   L I+GK IK + +RDPA IPW D G +Y+VES+GVF
Sbjct:    4 KVGINGFGRIGRVVLRNALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFKGDIKV-DGKDLVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.903e-24
Identity = 53/99 (53.54%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS HG FKGTI   D+  + +NGK I+  ++RDPA IPWG  G +Y+VES+GVF
Sbjct:    4 KVGINGFGRIGRIVFRNAIEAGTVDVVAVNDPFIETHYAAYMLKYDSQHGQFKGTIETYDEGLI-VNGKKIRFHTERDPANIPWGQDGAEYIVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.032e-23
Identity = 57/99 (57.58%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGRL                NDPFI   YM YMFK+DS HG +KGT+    D  L I GK I VF +RDPA IPWG  G DYVVES+GVF
Sbjct:    4 KVGINGFGRIGRLVIRNALEAQGVEVVAVNDPFIPLDYMVYMFKFDSVHGRYKGTVEA-KDGKLIIAGKPIAVFGERDPASIPWGASGADYVVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.348e-23
Identity = 54/99 (54.55%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFID +YMAYMFKYDSTHG F G++  + D  L I+G  I V ++RDPA+I W   G DYV+ES+GVF
Sbjct:    5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVE-IKDGKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVF 102          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.761e-23
Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFG IGRL                NDPFID  YM YMFKYDSTHG FKGT+   ++  L IN ++I VF +RDP+ I WGD G  YVVES+GVF
Sbjct:    3 KVGINGFGCIGRLVTRAAFDSGKVQVVAINDPFIDLDYMVYMFKYDSTHGRFKGTVK-AENGKLIINDQVITVFQERDPSSIKWGDAGAVYVVESTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.761e-23
Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG +   D+  L+++GK ++ + +RDPA IPW + G DYV+ES+GVF
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVKFSDNG-LDVDGKHVRFYQERDPANIPWAETGADYVIESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.761e-23
Identity = 53/99 (53.54%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGRL                NDPFID  YMAYM KYDSTHG + G +++  D  L+++G  I VF+ RDPAEIPW     DY+VE++GVF
Sbjct:    5 KVGINGFGRIGRLVLRAAIEKGTCQVVAINDPFIDLDYMAYMLKYDSTHGRYAGDVSI-KDGKLQVDGNSITVFAHRDPAEIPWATAAADYIVEATGVF 102          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.299e-23
Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS+HG+FKG I V D   L +NGK I+ +S+RDPA I W + G +Y+VES+GVF
Sbjct:    4 KVGINGFGRIGRILLSNALEKPELSVVAVNDPFIEPTYAAYMLKYDSSHGLFKGDIEV-DGQNLVVNGKPIRFYSERDPANIKWSETGAEYIVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.299e-23
Identity = 55/99 (55.56%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGRL                NDPFID  YM YMF+YDSTHG +KG +   +   L I+G  I V+S+RDPA I WGD G  YVVES+GVF
Sbjct:    3 KVGINGFGRIGRLVTRAAFLTKKVEIVAINDPFIDLDYMVYMFQYDSTHGKYKGEVKA-EGGKLVIDGHAITVYSERDPANIKWGDAGATYVVESTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.003e-23
Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGRL                NDPFID +YM YM K DSTHG F G ++  ++  L++NGKLI V  +RDPA IPW   G +YVVES+GVF
Sbjct:    5 KVGINGFGRIGRLVLRAAFLKNTVDVVSVNDPFIDLEYMVYMIKRDSTHGTFPGEVST-ENGKLKVNGKLISVHCERDPANIPWDKDGAEYVVESTGVF 102          
The following BLAST results are available for this feature:
BLAST of CB290353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
G3P1_TRIKO6.051e-2456.57Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_EMENI7.903e-2453.54Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_OMPOL1.032e-2357.58Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P1_SCHPO1.348e-2354.55Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_XENLA1.761e-2356.57Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_COCIM1.761e-2351.52Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3PC_CHOCR1.761e-2353.54Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_TRIAT2.299e-2353.54Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_DANRE2.299e-2355.56Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P_SCHMA3.003e-2354.55Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290353 ID=CB290353; Name=CB290353; organism=Citrus sinensis; type=EST; length=667bp
TGCCGTTAGACTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCCTTGAT
AGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAA
TGGCCTTCTCTTCTCCCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGC
GCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGC
TGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTC
CAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATT
CAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATC
ACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTG
GAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTG
GCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAA
GTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATG
ACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGG
GACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGA
ATCTTCTGGAGTCTTTA
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