CB290353

Overview
NameCB290353
Unique NameCB290353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.003e-23
Identity = 55/105 (52.38%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  355 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            S G  K+GINGFGRIGRL                NDPFI   YM+YMFKYDS HG +K   +NV D  TL    K + VF  R+P EIPWG+ G +YVVES+GVF
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVF 107          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.922e-23
Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+ +Y AYM KYDSTHG F G I  V+D  L +N + +K ++KR+P EIPW + G +Y+VES+GVF
Sbjct:    5 KVGINGFGRIGRIVFRNAAQSCEVEVVAVNDPFIEPEYAAYMLKYDSTHGQFNGDIQTVEDG-LVVNSRNVKFYNKRNPEEIPWAETGAEYIVESTGVF 102          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG +   ++  L+++GK ++ + +RDPA IPW + G DYV+ES+GVF
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVKFSENG-LDVDGKHVRFYQERDPANIPWAETGADYVIESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 54/99 (54.55%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG I V D + L +NGK I+   ++DPA IPW + G  YVVES+GVF
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVDIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIKV-DGNNLTVNGKTIRFHMEKDPANIPWSETGAYYVVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 55/102 (53.92%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL---IKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGRL                NDPFI+  YM YMFKYDSTHG FKG+++      +  NGK    I V + +DPAEIPWG  G +YVVES+GVF
Sbjct:    5 KVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHGRFKGSVSAEGGKLIVTNGKTTHHISVHNSKDPAEIPWGVDGAEYVVESTGVF 106          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 55/105 (52.38%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  355 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            S G  K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D +TL    K + VF  R+P EIPWG+ GV+YVVES+GVF
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALLRDDIELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVF 107          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.690e-23
Identity = 53/99 (53.54%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG I V D + L +NGK ++   ++DPA IPW + G  YVVES+GVF
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIKV-DGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.737e-23
Identity = 53/98 (54.08%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  373 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            VGINGFGRIGRL                NDPFI  +Y AYMFKYDSTH  +KG ++    + + I+GK I VF +RDP  IPWG  GVDYV+ES+GVF
Sbjct:    5 VGINGFGRIGRLVLRVALSRADIKVVAINDPFIAPEYAAYMFKYDSTHKAYKGEVSA-SGNKINIDGKEITVFQERDPVNIPWGKAGVDYVIESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.737e-23
Identity = 54/100 (54.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  367 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            +K+GINGFGRIGRL                NDPFID  YM Y+FKYDSTHG FKGT+   D   L +NGK I VF +RDP  I W   G +Y+VES+GVF
Sbjct:    2 SKIGINGFGRIGRLVLRAALDKGAEVVAV-NDPFIDVNYMVYLFKYDSTHGRFKGTV-AADGGFLVVNGKKITVFCERDPTNINWASAGAEYIVESTGVF 99          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.737e-23
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  361 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGT-INVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            G  K+GINGFGRIGRL                NDPFI  +YM YMFKYD+ HG +K + I + DD TL    K + VF  R+P EIPWG+ G DYVVES+GVF
Sbjct:    2 GKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTEYMTYMFKYDTVHGHWKHSDIKLKDDKTLLFGEKPVTVFGVRNPEEIPWGEAGADYVVESTGVF 104          
The following BLAST results are available for this feature:
BLAST of CB290353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
G3PC_PINSY3.003e-2352.38Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ERYGR3.922e-2351.52Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_COCP75.122e-2350.51Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCHE5.122e-2354.55Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_BRUMA5.122e-2353.92Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3PC_GINBI5.122e-2352.38Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CURLU6.690e-2353.54Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_PICPA8.737e-2354.08Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_GLOMM8.737e-2354.00Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3PX_HORVU8.737e-2352.43Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290353 ID=CB290353; Name=CB290353; organism=Citrus sinensis; type=EST; length=667bp
TGCCGTTAGACTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCCTTGAT
AGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAA
TGGCCTTCTCTTCTCCCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGC
GCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGC
TGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTC
CAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATT
CAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATC
ACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTG
GAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTG
GCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAA
GTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATG
ACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGG
GACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGA
ATCTTCTGGAGTCTTTA
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