CB290353

Overview
NameCB290353
Unique NameCB290353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.397e-22
Identity = 52/105 (49.52%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  355 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            +D   K+GINGFGRIGRL                NDPFI  +YM YMFKYDS HG +K   + V D+ TL    K + VF  R+P +IPWG+ G D+VVES+GVF
Sbjct:    2 ADKKIKIGINGFGRIGRLVARVILQRNDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVF 106          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.397e-22
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            +V INGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++  D+++L I+GK + VF +RDPA +PWG++ VD  ++S+GVF
Sbjct:    3 RVAINGFGRIGRLVLRIALSRPNVEVVAINDPFISVDYAAYMFKYDSTHGRFAGEVSH-DENSLIIDGKKVLVFQERDPATLPWGEHNVDIAIDSTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.660e-22
Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 1
Query:  373 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            VGINGFGRIGRL                NDPFI  +Y +YMFKYDSTHG + G ++  +   + I+GK I+V+ +RDP  IPWG  GVDYV++S+GVF
Sbjct:    5 VGINGFGRIGRLVLRIALSRKDIQIVAINDPFIAPEYASYMFKYDSTHGRYSGEVSH-EGENIVIDGKKIRVYQERDPVNIPWGKDGVDYVIDSTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            +V INGFGRIGR+                NDPFI   Y AYMFKYDSTHG + G +   DD  L I+GK IK + +RDPA++PWGD  +D V+E++GVF
Sbjct:    3 RVAINGFGRIGRIVLRIAMKRDGIDVVAINDPFITNDYAAYMFKYDSTHGRYDGEVTH-DDKDLIIDGKAIKCYQERDPADLPWGDNDIDIVIEATGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:  367 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            +K+GINGFGRIGRL                NDPFI  +YM YMFKYDSTHG+FKG +   +D  L ++GK I VF++  P  IPW   G +Y+VES+GVF
Sbjct:    1 SKIGINGFGRIGRLVLRAALEMGAQVVAV-NDPFIALEYMVYMFKYDSTHGMFKGEVK-AEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVF 98          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 52/100 (52.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D+ TL    + + VF  R+P EIPWG  G DYVVES+GVF
Sbjct:    5 KIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVF 104          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 51/98 (52.04%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  373 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            VGINGFGRIGR+                NDPFI+ +YM YMFKYDS HG FKGT+    D  L I GK + V+ +++P++I WG  G DYVVES+GVF
Sbjct:    4 VGINGFGRIGRIVFRNALLNPKIQVVAINDPFINLEYMVYMFKYDSVHGRFKGTVE-AKDGKLWIQGKPVIVYGEKNPSDIKWGAAGRDYVVESTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 52/103 (50.49%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  361 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGT-INVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            G  K+GINGFGRIGRL                NDPFI   YM YMFKYD+ HG +K + I + D  TL    K + VF  R+P EIPWG+ G +YVVES+GVF
Sbjct:    2 GKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGHWKHSDITLKDSKTLLFGDKPVTVFGIRNPEEIPWGEAGAEYVVESTGVF 104          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 52/99 (52.53%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFID  YMAYMFKYDSTHG F+G++       L I+G  I V ++RDPA I W   G +YV+ES+GVF
Sbjct:    5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVE-TKGGKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVF 102          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 55/102 (53.92%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  373 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEIN-GK---LIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            VGINGFGRIGRL                NDPFI   YM Y+F+YDSTHG FKGT+    D  +  N GK    IKV++ +DPAEI WG  G DYVVES+GVF
Sbjct:    6 VGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVKHEGDYLIVANEGKSQHKIKVYNSKDPAEIQWGAAGADYVVESTGVF 107          
The following BLAST results are available for this feature:
BLAST of CB290353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
G3PC_SINAL7.397e-2249.52Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_KLULA7.397e-2250.51Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_PICCI9.660e-2251.02Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P1_CANGA1.262e-2150.51Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_PANVR1.648e-2151.00Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P_ATRNU1.648e-2152.00Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3P_LYOSH2.152e-2152.04Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3PC_MAIZE2.152e-2150.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_SCHPO2.152e-2152.53Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P2_CAEBR2.152e-2153.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290353 ID=CB290353; Name=CB290353; organism=Citrus sinensis; type=EST; length=667bp
TGCCGTTAGACTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCCTTGAT
AGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAA
TGGCCTTCTCTTCTCCCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGC
GCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGC
TGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTC
CAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATT
CAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATC
ACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTG
GAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTG
GCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAA
GTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATG
ACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGG
GACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGA
ATCTTCTGGAGTCTTTA
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