CB290353

Overview
NameCB290353
Unique NameCB290353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 51/99 (51.52%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KV INGFGRIGRL                NDPFI   Y AYMFKYDSTHG +KG +     + L I+G  I VF ++DPA +PWG  GVD V++S+GVF
Sbjct:    3 KVAINGFGRIGRLVLRIALQRKALEVVAVNDPFISVDYAAYMFKYDSTHGRYKGEVTT-SGNDLVIDGHKIAVFQEKDPANLPWGKLGVDIVIDSTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  361 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            G  K+GINGFGRIGRL                NDPFIDA+YMAYMFKYDS H  + G +N   D  L + G+ I  F++ DP++I WG  G D V+ES+GVF
Sbjct:    3 GKIKIGINGFGRIGRLVMRATMLRPDIEVVAINDPFIDAEYMAYMFKYDSVHKTWPGHVNGSKDGFL-VEGRKIHTFTESDPSKINWGAAGADIVIESTGVF 103          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 56/102 (54.90%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  373 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEIN-GKL---IKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            VGINGFGRIGRL                NDPFI   YM Y+F+YDSTHG FKGT+    D  L    GK    IKV++ RDPAEI WG  G DYVVES+GVF
Sbjct:    6 VGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKSQHKIKVYNSRDPAEIQWGSAGADYVVESTGVF 107          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI  +YM YMFKYDS HG FKGT+       L ++GK I VF ++D   IPW   G +Y+VES+GVF
Sbjct:    4 KVGINGFGRIGRIVLRNALLNPEVNVVAVNDPFIALEYMVYMFKYDSVHGRFKGTVE-TKGGKLIVDGKEISVFGEKDAGAIPWSSVGAEYIVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 52/103 (50.49%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  361 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGT-INVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            G  K+GINGFGRIGRL                NDPFI   YM YMFKYD+ HG +K + I + D  TL    K + VF  R+P EIPWG+ G +YVVES+GVF
Sbjct:    2 GKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIALKDSKTLLFGEKPVTVFGIRNPEEIPWGEAGAEYVVESTGVF 104          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 51/100 (51.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            K+GINGFGRIGRL                NDPFI   YMAYMFKYD+ HG +K   + V D+ TL    K + VF  R+P EIPW + G +YVVES+GVF
Sbjct:    5 KIGINGFGRIGRLVARVALVRDDVELVAVNDPFITVDYMAYMFKYDTVHGQYKHHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVF 104          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 50/105 (47.62%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  355 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            +D   ++GINGFGRIGRL                NDPFI  +YM YMFKYDS HG +K   + + D+ TL    K + VF  R+P +IPW + G DYVVES+GVF
Sbjct:    2 ADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVF 106          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 56/128 (43.75%), Postives = 65/128 (50.78%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDD-----------------------------STLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG FK  I  ++D                               L ING  I +F +RDP++I WGD G +YVVES+GVF
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKGTVKAENGKLVINGHAITIFQERDPSKIKWGDAGAEYVVESTGVF 130          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 49/98 (50.00%), Postives = 62/98 (63.27%), Query Frame = 1
Query:  373 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            VGINGFGRIGRL                NDPF+D +YMAY+FKYDS HG ++G +    D  L I+G  I  F++R+PA I W D G +Y+VES+GVF
Sbjct:    4 VGINGFGRIGRLVLRNALQMQILTVVAVNDPFLDVEYMAYLFKYDSVHGRYQGKVE-TKDGKLIIDGHKIAAFAEREPANIKWADCGAEYIVESTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.794e-21
Identity = 51/103 (49.51%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  361 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            G  K+GINGFGRIGRL                NDPFI   YM YMFKYD+ HG +K   + V D+ TL    K + VF  R+P EIPWG+ G ++VVES+GVF
Sbjct:    3 GKIKIGINGFGRIGRLVARVALARDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHELKVKDEKTLLFGEKPVTVFGCRNPEEIPWGETGAEFVVESTGVF 105          
The following BLAST results are available for this feature:
BLAST of CB290353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
G3P1_KLULA2.152e-2151.52Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3PC_CHLRE2.811e-2150.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_CAEBR2.811e-2154.90Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P_LENED3.671e-2150.51Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3PD_MAIZE3.671e-2150.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL3.671e-2151.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH3.671e-2147.62Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_JACOR3.671e-2143.75Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P1_AGABI3.671e-2150.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3PC_RANAC4.794e-2149.51Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290353 ID=CB290353; Name=CB290353; organism=Citrus sinensis; type=EST; length=667bp
TGCCGTTAGACTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCCTTGAT
AGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAA
TGGCCTTCTCTTCTCCCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGC
GCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGC
TGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTC
CAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATT
CAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATC
ACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTG
GAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTG
GCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAA
GTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATG
ACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGG
GACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGA
ATCTTCTGGAGTCTTTA
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