CB290408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_MYCBO (Malate dehydrogenase OS=Mycobacterium bovis GN=mdh PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.703e-40 Identity = 84/159 (52.83%), Postives = 104/159 (65.41%), Query Frame = -3 Query: 288 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 764 Q++ K V+D+K + IWGNHS++QYPD+ HA V AG K E+V D AW+ EFI TV +RGAAII AR D RDW+LGTP WVSM V SDGSY VP GLI SFPVT + G WTIV GL IDEFSR ++D + EL++E++ Sbjct: 167 QLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AG-KNAAEVVNDQAWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_STRCO (Malate dehydrogenase OS=Streptomyces coelicolor GN=mdh PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.314e-39 Identity = 84/158 (53.16%), Postives = 108/158 (68.35%), Query Frame = -3 Query: 291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764 Q+++K V+D+K + IWGNHS++QYPD+ HATV AG K E V D+ WL EFI TV +RGAAII+AR A DH+ WV GT EG W SMG+ SDGSY VP G+I SFPVT ++G + IVQGL I+EFSR ++D + +ELSEE+ Sbjct: 167 QLAKKTGSTVADIKRLTIWGNHSATQYPDIFHATV---AG-KNAAETVNDEKWLADEFIPTVAKRGAAIIEARGASSAASAANAAIDHVYTWVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGSYEIVQGLDINEFSRARIDASVKELSEER 320
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_NITEU (Malate dehydrogenase OS=Nitrosomonas europaea GN=mdh PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.314e-39 Identity = 73/157 (46.50%), Postives = 105/157 (66.88%), Query Frame = -3 Query: 294 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 764 Q++ KLN VS ++ +I+WGNHSS+Q+PD++HA ++ + V +L+KD W+ FI TVQ RGA +I+AR DH+RDW+ GT + W++MG+ SDGSY +P G+IY FPV C+NG IVQGL I FSR +LD+ +EL++E Sbjct: 166 QVAMKLNQPVSHIRKMIVWGNHSSTQFPDLSHAEID----HQKVIDLIKDQTWVENSFIPTVQNRGAVVIEARGLSSAASAANAIIDHMRDWIFGTRDDDWITMGILSDGSYKIPKGVIYGFPVVCKNGGRKIVQGLEISPFSRTRLDIAYDELTQE 318
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 4.993e-39 Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = -3 Query: 294 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 764 Q++ KLN VS++K +I+WGNHSS+Q+PD+ HA + G+ V L+KD W+ FI TVQ+RGA +I+AR DH+R+W GT +G W +MG+ SDGSY +P G+IY FPV C+NG IVQGL I+ FSR +LD EL++E Sbjct: 166 QVAMKLNQPVSNIKKMIVWGNHSSTQFPDLYHAEI----GDTKVINLIKDPIWIENYFIPTVQKRGAVVIEARGLSSAASAANAIIDHLRNWFFGTADGDWTTMGILSDGSYEIPEGVIYGFPVICKNGMREIVQGLEINPFSRTRLDAAYNELTQE 318
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.112e-38 Identity = 81/158 (51.27%), Postives = 103/158 (65.19%), Query Frame = -3 Query: 291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764 Q++ K V V+D+K + IWGNHS++QYPD+ HA V K E+V D AW+ FI TV +RGA II AR + D R W+LGTP WVSM V SDGSY VP GLI SFPVT ++G W+IV+GL IDEFSR ++D TA EL++E+ Sbjct: 167 QLAAKTGVAVTDIKKMTIWGNHSATQYPDLFHAEVKG----KNAAEVVNDQAWIEEYFIPTVAKRGATIIDARGASSAASAASASVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTAAELADER 320
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.112e-38 Identity = 81/158 (51.27%), Postives = 102/158 (64.56%), Query Frame = -3 Query: 291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764 Q++ K V V+D+K + IWGNHS++QYPD+ HA V K E+V D AW+ FI TV +RGAAII AR D R W+LGTP WVSM V SDGSY VP GLI SFPVT ++G W+IV+GL IDEFSR ++D T EL++E+ Sbjct: 167 QLAAKTGVAVTDIKKMTIWGNHSATQYPDLFHAEVKG----KNAAEVVNDQAWIEEYFIPTVAKRGAAIIDARGASSAASAASATVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTTAELADER 320
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.453e-38 Identity = 81/158 (51.27%), Postives = 106/158 (67.09%), Query Frame = -3 Query: 291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764 Q++ K VSD+K + IWGNHS++QYPD+ HA + AG K E V D+ WL FI TV +RGAAII+AR A DH+ WV GT EG W SMG+ SDGSY VP G+I SFPVT ++G++ IVQGL I+EFSR ++D + +EL+EE+ Sbjct: 167 QLAAKTGAAVSDIKKLTIWGNHSATQYPDIFHAEI---AG-KNAAETVNDEVWLADTFIPTVAKRGAAIIEARGASSAASAANAAIDHVHTWVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGKYEIVQGLDINEFSRTRIDASVKELTEER 320
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_STRAW (Malate dehydrogenase OS=Streptomyces avermitilis GN=mdh PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.478e-38 Identity = 81/158 (51.27%), Postives = 108/158 (68.35%), Query Frame = -3 Query: 291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764 Q+++K V+D+K + IWGNHS++QYPD+ HA+V AG K E+V D+ WL +FI TV +RGAAII+AR A DH+ WV GT +G W SMG+ SDGSY VP GLI SFPVT ++G + IVQGL I+EFSR ++D + +EL EE+ Sbjct: 167 QLAKKTGSTVADIKRLTIWGNHSATQYPDIFHASV---AG-KNAAEVVNDEKWLAEDFIPTVAKRGAAIIEARGASSAASAANAAIDHVYTWVNGTADGDWTSMGIPSDGSYGVPEGLISSFPVTTKDGRYEIVQGLEINEFSRARIDASVKELEEER 320
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_NOCSJ (Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=mdh PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 5.521e-38 Identity = 77/158 (48.73%), Postives = 102/158 (64.56%), Query Frame = -3 Query: 291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764 Q++ K V+D+K + IWGNHS++QYPDV HA + G + E+V D W+ FI TV +RGAAII+AR D RDW+ G+ + WVSM V SDGSY VP GLI SFPVT ++G+W IVQGL ID+FSR K+D + EL++E+ Sbjct: 166 QLAAKTGAAVTDIKKMTIWGNHSATQYPDVFHAEI----GGRNAAEVVGDQDWIESTFIPTVAKRGAAIIEARGSSSAASAASATIDAARDWLFGSADADWVSMAVVSDGSYGVPEGLISSFPVTTKDGDWEIVQGLEIDDFSRAKIDASTAELADER 319
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_PSYWF (Malate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=mdh PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.210e-38 Identity = 82/159 (51.57%), Postives = 104/159 (65.41%), Query Frame = -3 Query: 291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGL-SIDEFSRKKLDLTAEELSEEK 764 Q++E+ N V+DVK +IIWGNHSS+QYPD+ TVN KP E V D W +I +VQ+RGAAII+AR A H+R W LGT E WVSMGVYS G Y + GLIYSFP TC NG+W IV+GL + +FS++K+ T +ELSEE+ Sbjct: 166 QLAEETNSTVNDVKKMIIWGNHSSTQYPDLTECTVNG----KPALEQVDRD-WYENSYIPSVQKRGAAIIEARGASSAASAANAAIAHMRTWALGTDENDWVSMGVYSQGEYGIAKGLIYSFPCTCSNGDWKIVEGLDTSSDFSQEKMKATEQELSEER 319 The following BLAST results are available for this feature:
BLAST of CB290408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 190
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290408 ID=CB290408; Name=CB290408; organism=Citrus sinensis; type=EST; length=766bpback to top |