CB290408

Overview
NameCB290408
Unique NameCB290408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_MYCBO (Malate dehydrogenase OS=Mycobacterium bovis GN=mdh PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.703e-40
Identity = 84/159 (52.83%), Postives = 104/159 (65.41%), Query Frame = -3
Query:  288 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 764
            Q++ K    V+D+K + IWGNHS++QYPD+ HA V   AG K   E+V D AW+  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI SFPVT + G WTIV GL IDEFSR ++D +  EL++E++
Sbjct:  167 QLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AG-KNAAEVVNDQAWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_STRCO (Malate dehydrogenase OS=Streptomyces coelicolor GN=mdh PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.314e-39
Identity = 84/158 (53.16%), Postives = 108/158 (68.35%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q+++K    V+D+K + IWGNHS++QYPD+ HATV   AG K   E V D+ WL  EFI TV +RGAAII+AR           A DH+  WV GT EG W SMG+ SDGSY VP G+I SFPVT ++G + IVQGL I+EFSR ++D + +ELSEE+
Sbjct:  167 QLAKKTGSTVADIKRLTIWGNHSATQYPDIFHATV---AG-KNAAETVNDEKWLADEFIPTVAKRGAAIIEARGASSAASAANAAIDHVYTWVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGSYEIVQGLDINEFSRARIDASVKELSEER 320          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_NITEU (Malate dehydrogenase OS=Nitrosomonas europaea GN=mdh PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.314e-39
Identity = 73/157 (46.50%), Postives = 105/157 (66.88%), Query Frame = -3
Query:  294 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 764
            Q++ KLN  VS ++ +I+WGNHSS+Q+PD++HA ++     + V +L+KD  W+   FI TVQ RGA +I+AR             DH+RDW+ GT +  W++MG+ SDGSY +P G+IY FPV C+NG   IVQGL I  FSR +LD+  +EL++E
Sbjct:  166 QVAMKLNQPVSHIRKMIVWGNHSSTQFPDLSHAEID----HQKVIDLIKDQTWVENSFIPTVQNRGAVVIEARGLSSAASAANAIIDHMRDWIFGTRDDDWITMGILSDGSYKIPKGVIYGFPVVCKNGGRKIVQGLEISPFSRTRLDIAYDELTQE 318          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.993e-39
Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = -3
Query:  294 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 764
            Q++ KLN  VS++K +I+WGNHSS+Q+PD+ HA +    G+  V  L+KD  W+   FI TVQ+RGA +I+AR             DH+R+W  GT +G W +MG+ SDGSY +P G+IY FPV C+NG   IVQGL I+ FSR +LD    EL++E
Sbjct:  166 QVAMKLNQPVSNIKKMIVWGNHSSTQFPDLYHAEI----GDTKVINLIKDPIWIENYFIPTVQKRGAVVIEARGLSSAASAANAIIDHLRNWFFGTADGDWTTMGILSDGSYEIPEGVIYGFPVICKNGMREIVQGLEINPFSRTRLDAAYNELTQE 318          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.112e-38
Identity = 81/158 (51.27%), Postives = 103/158 (65.19%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q++ K  V V+D+K + IWGNHS++QYPD+ HA V      K   E+V D AW+   FI TV +RGA II AR           + D  R W+LGTP   WVSM V SDGSY VP GLI SFPVT ++G W+IV+GL IDEFSR ++D TA EL++E+
Sbjct:  167 QLAAKTGVAVTDIKKMTIWGNHSATQYPDLFHAEVKG----KNAAEVVNDQAWIEEYFIPTVAKRGATIIDARGASSAASAASASVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTAAELADER 320          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.112e-38
Identity = 81/158 (51.27%), Postives = 102/158 (64.56%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q++ K  V V+D+K + IWGNHS++QYPD+ HA V      K   E+V D AW+   FI TV +RGAAII AR             D  R W+LGTP   WVSM V SDGSY VP GLI SFPVT ++G W+IV+GL IDEFSR ++D T  EL++E+
Sbjct:  167 QLAAKTGVAVTDIKKMTIWGNHSATQYPDLFHAEVKG----KNAAEVVNDQAWIEEYFIPTVAKRGAAIIDARGASSAASAASATVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTTAELADER 320          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.453e-38
Identity = 81/158 (51.27%), Postives = 106/158 (67.09%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q++ K    VSD+K + IWGNHS++QYPD+ HA +   AG K   E V D+ WL   FI TV +RGAAII+AR           A DH+  WV GT EG W SMG+ SDGSY VP G+I SFPVT ++G++ IVQGL I+EFSR ++D + +EL+EE+
Sbjct:  167 QLAAKTGAAVSDIKKLTIWGNHSATQYPDIFHAEI---AG-KNAAETVNDEVWLADTFIPTVAKRGAAIIEARGASSAASAANAAIDHVHTWVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGKYEIVQGLDINEFSRTRIDASVKELTEER 320          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_STRAW (Malate dehydrogenase OS=Streptomyces avermitilis GN=mdh PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.478e-38
Identity = 81/158 (51.27%), Postives = 108/158 (68.35%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q+++K    V+D+K + IWGNHS++QYPD+ HA+V   AG K   E+V D+ WL  +FI TV +RGAAII+AR           A DH+  WV GT +G W SMG+ SDGSY VP GLI SFPVT ++G + IVQGL I+EFSR ++D + +EL EE+
Sbjct:  167 QLAKKTGSTVADIKRLTIWGNHSATQYPDIFHASV---AG-KNAAEVVNDEKWLAEDFIPTVAKRGAAIIEARGASSAASAANAAIDHVYTWVNGTADGDWTSMGIPSDGSYGVPEGLISSFPVTTKDGRYEIVQGLEINEFSRARIDASVKELEEER 320          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_NOCSJ (Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=mdh PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.521e-38
Identity = 77/158 (48.73%), Postives = 102/158 (64.56%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q++ K    V+D+K + IWGNHS++QYPDV HA +    G +   E+V D  W+   FI TV +RGAAII+AR             D  RDW+ G+ +  WVSM V SDGSY VP GLI SFPVT ++G+W IVQGL ID+FSR K+D +  EL++E+
Sbjct:  166 QLAAKTGAAVTDIKKMTIWGNHSATQYPDVFHAEI----GGRNAAEVVGDQDWIESTFIPTVAKRGAAIIEARGSSSAASAASATIDAARDWLFGSADADWVSMAVVSDGSYGVPEGLISSFPVTTKDGDWEIVQGLEIDDFSRAKIDASTAELADER 319          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_PSYWF (Malate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.210e-38
Identity = 82/159 (51.57%), Postives = 104/159 (65.41%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGL-SIDEFSRKKLDLTAEELSEEK 764
            Q++E+ N  V+DVK +IIWGNHSS+QYPD+   TVN     KP  E V  D W    +I +VQ+RGAAII+AR           A  H+R W LGT E  WVSMGVYS G Y +  GLIYSFP TC NG+W IV+GL +  +FS++K+  T +ELSEE+
Sbjct:  166 QLAEETNSTVNDVKKMIIWGNHSSTQYPDLTECTVNG----KPALEQVDRD-WYENSYIPSVQKRGAAIIEARGASSAASAANAAIAHMRTWALGTDENDWVSMGVYSQGEYGIAKGLIYSFPCTCSNGDWKIVEGLDTSSDFSQEKMKATEQELSEER 319          
The following BLAST results are available for this feature:
BLAST of CB290408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
MDH_MYCBO7.703e-4052.83Malate dehydrogenase OS=Mycobacterium bovis GN=mdh... [more]
MDH_STRCO1.314e-3953.16Malate dehydrogenase OS=Streptomyces coelicolor GN... [more]
MDH_NITEU1.314e-3946.50Malate dehydrogenase OS=Nitrosomonas europaea GN=m... [more]
MDH_NITEC4.993e-3947.77Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]
MDH_MYCUA1.112e-3851.27Malate dehydrogenase OS=Mycobacterium ulcerans (st... [more]
MDH_MYCMM1.112e-3851.27Malate dehydrogenase OS=Mycobacterium marinum (str... [more]
MDH_STRGG1.453e-3851.27Malate dehydrogenase OS=Streptomyces griseus subsp... [more]
MDH_STRAW2.478e-3851.27Malate dehydrogenase OS=Streptomyces avermitilis G... [more]
MDH_NOCSJ5.521e-3848.73Malate dehydrogenase OS=Nocardioides sp. (strain B... [more]
MDH_PSYWF7.210e-3851.57Malate dehydrogenase OS=Psychrobacter sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290408 ID=CB290408; Name=CB290408; organism=Citrus sinensis; type=EST; length=766bp
GTTAAAACAAAAAAAAAATTGTTATTGATAGTTTGATACATAAATCACAA
TGGGCCTTTAATATCCATTTATCCAGGAAAAGTAACAAAACTCCAAAATC
CCGATATTCAAATGCAGAAATAGCAACATAAGATGGAAAGGCTTCTCCAT
CATCAATGGTTCCTCCAGGTTTCAACAATGGTTTTATTCGAAACTGTAAC
TATACCAACTACTCAGACAAAGCTAAGGGCCTTGGTAACACACTATTGAA
GGGAAGAAAGCATTTAAGAGAGACATGAGTATGCGAGGGCCTTCTCCTCG
GAGAGCTCCTCTGCTGTCAAGTCCAACTTCTTCCTTGAGAATTCATCAAT
GCTGAGTCCTTGAACAATTGTCCATTCACCGTTGCGGCAGGTTACTGGGA
ATGAGTAAATGAGCCCAGCTGGTACATTGTATGAACCATCAGAGTATACC
CCCATGGAGACCCAGGTGCCCTCAGGAGTTCCAAGAACCCAATCACGGAT
ATGGTCACAAGCAGAGCTAGCAGCAGACAGAGCACTCGAGAGCTTTCTGG
CTTTGATGATTGCAGCACCACGTTGTTGGACTGTGGTTATGAATTCTCCA
TTCAACCATGCATCATCCTTGACAAGCTCACGGACAGGCTTTTCCCCAGC
TGCAGTATTGACAGTTGCATGGTTGACATCAGGGTACTGAGATGATGAAT
GATTTCCCCAAATAATCACATTCTTAACATCAGATACTTGGACATTCAGT
TTCTCAGATATTTGTC
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