CB290456

Overview
NameCB290456
Unique NameCB290456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 4.222e-98
Identity = 167/189 (88.36%), Postives = 180/189 (95.24%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GDQ+W+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMRNDGG ++IK AIEKL  RH EHI+AYGEGNERRLTGRHETADINTFSWGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPY+VTSMIAETTI+WKP
Sbjct:  168 GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDQVWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEIIKSAIEKLKLRHKEHISAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYIVTSMIAETTIIWKP 356          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 7.202e-98
Identity = 171/186 (91.94%), Postives = 178/186 (95.70%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDIV+SHYKACLYAGINISGIN EVMPGQWEFQVGP VGIS+GD+LW+ARYILERITEIAGVVLS DPKPI GDWNGAGAH NYSTKSMRNDGG +VIKKAIEKLGKRH EHIAAYGEGNERRLTGRHETADI+TF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+L
Sbjct:  168 GRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGPSVGISAGDELWVARYILERITEIAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIEKLGKRHNEHIAAYGEGNERRLTGRHETADISTFFWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLL 353          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 7.202e-98
Identity = 167/189 (88.36%), Postives = 179/189 (94.71%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV++HYKAC+YAGINISGINGEVMPGQWEFQVGP VGIS+GD++W ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG +VIK AI+KLGK+H EHIAAYGEGNERRLTGRHETADINTF WGVANRGAS+RVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  167 GRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKAAIDKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 355          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 9.406e-98
Identity = 166/189 (87.83%), Postives = 181/189 (95.77%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV++HYKAC+YAGINISGINGEVMPGQWEFQVGP VGIS+GD++W ARYILERITE+AG V+SFDPKPI GDWNGAGAH+NYSTKSMR +GG +VIKKAIEKLG RH EHIAAYG+GNERRLTGRHETADINTFSWGVANRG+S+RVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  168 GRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITELAGAVVSFDPKPIPGDWNGAGAHSNYSTKSMREEGGYEVIKKAIEKLGLRHKEHIAAYGKGNERRLTGRHETADINTFSWGVANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 356.681 bits (914), Expect = 9.406e-98
Identity = 167/189 (88.36%), Postives = 181/189 (95.77%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRD+V +HYKACL+AGINISGINGEVMPGQWEFQVGP VGIS+GD++W+ARYILERITE+AGVVL+FDPKPIKGDWNGAGAH NYSTKSMR DGG ++IKKAIEKLGKR  EHI+AYGEGNERRLTG+HETADINTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL KP
Sbjct:  167 GRDVVEAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLTFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGKRLPEHISAYGEGNERRLTGKHETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILLKP 355          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 355.91 bits (912), Expect = 1.604e-97
Identity = 166/188 (88.30%), Postives = 179/188 (95.21%), Query Frame = -1
Query:  279 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 842
            GRD+V++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD++W+ARYILERITE+AG+VLS DPKPIKGDWNGAGAH NYSTKSMR  GG +VIK+AIEKLG+RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIA+TTILWK
Sbjct:  168 GRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEMAGIVLSLDPKPIKGDWNGAGAHTNYSTKSMREAGGYEVIKEAIEKLGRRHREHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIADTTILWK 355          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 355.91 bits (912), Expect = 1.604e-97
Identity = 166/189 (87.83%), Postives = 178/189 (94.18%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRD+V+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+ D++W+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR +GG ++IKKAI+KLG RH EHIAAYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILW P
Sbjct:  168 GRDVVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAADEIWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHCNYSTKSMREEGGYEIIKKAIDKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 4.668e-97
Identity = 167/188 (88.83%), Postives = 180/188 (95.74%), Query Frame = -1
Query:  279 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 842
            GRDIV++HYKACL+AGINISGINGEVMPGQWEFQVGP VGIS+GD++W ARYILERITEIAGVV+SFDPKPI GDWNGAGAHAN+STKSMR +GG +VIKKAIEKLG RH EHIAAYGEGNERRLTG+HETADIN FSWGVANRG+SIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWK
Sbjct:  168 GRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHANFSTKSMRENGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 1.040e-96
Identity = 166/188 (88.30%), Postives = 180/188 (95.74%), Query Frame = -1
Query:  279 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 842
            GRDIV++HYKACL+AGINISGINGEVMPGQWEFQVGP VGIS+GD++W ARYILERITEI+GVV+SFDPKPI GDWNGAGAHAN+STKSMR +GG +VIKKAIEKLG RH EHIAAYGEGNERRLTG+HETADIN FSWGVANRG+SIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWK
Sbjct:  168 GRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEISGVVVSFDPKPIPGDWNGAGAHANFSTKSMRENGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 1.040e-96
Identity = 165/187 (88.24%), Postives = 177/187 (94.65%), Query Frame = -1
Query:  282 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 842
            GRD+V++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD++W+ARYILERITE+AG+VLS DPKPIKGDWNGAGAH NYSTKSMR  GG +VIK AI+KLGKRH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTE+EGKGYFEDRRPASNMDPYVVT MIAETTILW
Sbjct:  168 GRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEMAGIVLSLDPKPIKGDWNGAGAHTNYSTKSMREAGGYEVIKAAIDKLGKRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEREGKGYFEDRRPASNMDPYVVTGMIAETTILW 354          
The following BLAST results are available for this feature:
BLAST of CB290456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLN11_ORYSJ4.222e-9888.36Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA_LUPLU7.202e-9891.94Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA1_SOYBN7.202e-9888.36Glutamine synthetase cytosolic isozyme 1 OS=Glycin... [more]
GLNA2_PHAVU9.406e-9887.83Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA1_PEA9.406e-9888.36Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLNA5_MAIZE1.604e-9788.30Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLN11_ARATH1.604e-9787.83Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA3_PEA4.668e-9788.83Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA4_PEA1.040e-9688.30Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA1_MAIZE1.040e-9688.24Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290456 ID=CB290456; Name=CB290456; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTTTTTTTGCTAAAATCTTCTTTACTTTTTAAACAGAAGCGA
AGTAGTTTTAAACTATAATATAGTAATCACAACTGAGCATCCCAAACAAT
GAAGTACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCA
AACAACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTT
TTGTGGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGT
CATCCATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCA
GCGATCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCT
GTCTTCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAA
TGGAGGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCA
GTTTCATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGC
AATGTGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCA
CATCAATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGT
GCACCAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAG
AACAACTCCGGCAATTTCAGTAATCCTCTCGAGTATGTACCGAGCCATCC
ATAACTGATCACCAGAAGAGATACCCACACAGGGACCCACTTGGAATTCC
CACTGACCCGGCATAACTTCACCGTTAATGCCACTGATGTTAATTCCAGC
GTAAAGGCAAGCTTTGTAGTGAGAATTCACAATGTCTCGGCC
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