CB290456

Overview
NameCB290456
Unique NameCB290456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 352.058 bits (902), Expect = 2.317e-96
Identity = 166/187 (88.77%), Postives = 177/187 (94.65%), Query Frame = -1
Query:  282 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 842
            GRDIV++HYKACLYAG+NISGINGEVMPGQWEFQVGP VGI++ DQ+W+ARYILERITEI GVV+SFDPKPI GDWNGAGAH NYSTK+MR +GG +VIKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct:  168 GRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGIAAADQIWVARYILERITEIYGVVVSFDPKPIPGDWNGAGAHTNYSTKTMREEGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 3.952e-96
Identity = 164/189 (86.77%), Postives = 178/189 (94.18%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV++HYKACLY+GINISGINGEVMPGQWEFQVGP VGIS+ D+LW AR+I+ERITE AGVVLSFDPKPI+GDWNGAG H NYSTKSMR +GG +VIKKAIEKL  RH EHI+AYGEGNERRLTGRHETAD+NTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILWKP
Sbjct:  169 GRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGISAADELWCARFIMERITEKAGVVLSFDPKPIEGDWNGAGCHTNYSTKSMRKEGGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 6.741e-96
Identity = 165/189 (87.30%), Postives = 176/189 (93.12%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV+SHYKACLYAGIN+SG NGEVMPGQWEFQVGP VGI++ DQ+W+ARYILERITE+AGVVLS DPKPI GDWNGAGAH NYSTKSMR DGG +VIKKAIEKLG RH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTE+ GKGYFEDRRPASNMDPY VTSMIAE+TILWKP
Sbjct:  168 GRDIVDSHYKACLYAGINVSGTNGEVMPGQWEFQVGPTVGIAAADQVWVARYILERITELAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFLWGVANRGASIRVGRDTEQAGKGYFEDRRPASNMDPYTVTSMIAESTILWKP 356          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 350.517 bits (898), Expect = 6.741e-96
Identity = 165/189 (87.30%), Postives = 177/189 (93.65%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV++HYKA LYAGINISGINGEVMPGQWEFQVGP VGIS+ D++W+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR +GG ++IKKAIEKLG RH EHI+AYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LW P
Sbjct:  168 GRDIVDAHYKASLYAGINISGINGEVMPGQWEFQVGPSVGISAADEIWIARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREEGGYEIIKKAIEKLGLRHKEHISAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWNP 356          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.961e-95
Identity = 164/189 (86.77%), Postives = 178/189 (94.18%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGISSGDQ+W+ARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG +VIK AIEKL  RH EHIAAYGEGN+ RLTGRHETADINTFSWGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct:  168 GRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHREHIAAYGEGNDGRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIIWKP 356          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 5.707e-95
Identity = 160/189 (84.66%), Postives = 179/189 (94.71%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV++HYKACL+AGINISGIN EVMPGQWEFQ+GP VG+S+GD +W+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR++GG +VIKKAI+KLG RH EHIAAYG+GNERRLTGRHETADIN F WGVANRGAS+RVGRDTEK+GKGYFEDRRPASNMDPY+VT+MIAETTILW+P
Sbjct:  170 GRDIVDAHYKACLFAGINISGINAEVMPGQWEFQIGPVVGVSAGDHVWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRSNGGYEVIKKAIKKLGMRHREHIAAYGDGNERRLTGRHETADINNFVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNMDPYLVTAMIAETTILWEP 358          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 7.453e-95
Identity = 162/188 (86.17%), Postives = 175/188 (93.09%), Query Frame = -1
Query:  279 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 842
            GRDIV++HYKAC+YAGINISGINGEVMPGQWEFQVGP VGI++ DQ+W+ARYILER+TE+AGVVLS DPKPI GDWNGAGAH N+STKSMR  GG +VIKKAI+KL  RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIAETT+LWK
Sbjct:  168 GRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGIAAADQVWVARYILERVTEVAGVVLSLDPKPIPGDWNGAGAHTNFSTKSMREPGGYEVIKKAIDKLALRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIAETTLLWK 355          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.271e-94
Identity = 162/186 (87.10%), Postives = 177/186 (95.16%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDIV++HYKACLYAGI ISGINGEVMPGQWEFQVGP  GISSGDQ+W+ARY+LERITEI+GV++SFDPKP+ GDWNGAGAH NYSTK+MRNDGG++VIKKAI KL  +H EHIAAYGEGNERRLTG+HETADINTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL
Sbjct:  168 GRDIVDAHYKACLYAGIGISGINGEVMPGQWEFQVGPVEGISSGDQVWVARYLLERITEISGVIVSFDPKPVPGDWNGAGAHCNYSTKTMRNDGGLEVIKKAIGKLQLKHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 353          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 6.309e-94
Identity = 163/193 (84.46%), Postives = 177/193 (91.71%), Query Frame = -1
Query:  264 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP*KTN 842
            GRDIV+  YKACLYAGI+ISGINGEVMPGQWEFQV P VG+S+GDQLW+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR+DGG +VIKKAI KLG RH EHIAAYG+GNER LTGRHETADINTF WGV NRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVT +IAETT+LW+P  +N
Sbjct:  167 GRDIVDCAYKACLYAGIDISGINGEVMPGQWEFQVAPAVGVSAGDQLWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRSDGGYEVIKKAIGKLGLRHREHIAAYGDGNERPLTGRHETADINTFVWGVPNRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTCLIAETTMLWEPSHSN 359          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 8.240e-94
Identity = 160/189 (84.66%), Postives = 176/189 (93.12%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV+SHYKACL+ G+NISGINGEVMPGQWEFQVGP VGIS+GDQ+W+ARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMRNDGG  VI  A+EKL  +H EHIAAYGEGNERRLTG+HETADINT SWGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  168 GRDIVDSHYKACLFGGVNISGINGEVMPGQWEFQVGPTVGISAGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRNDGGFKVIVDAVEKLKLKHKEHIAAYGEGNERRLTGKHETADINTSSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAQTTILWKP 356          
The following BLAST results are available for this feature:
BLAST of CB290456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_LACSA2.317e-9688.77Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA_PINSY3.952e-9686.77Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLN14_ARATH6.741e-9687.30Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLN12_ARATH6.741e-9687.30Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA3_MAIZE1.961e-9586.77Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLN13_ORYSJ5.707e-9584.66Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLN12_ORYSJ7.453e-9586.17Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]
GLN13_ARATH1.271e-9487.10Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA2_MAIZE6.309e-9484.46Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]
GLNA3_HORVU8.240e-9484.66Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290456 ID=CB290456; Name=CB290456; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTTTTTTTGCTAAAATCTTCTTTACTTTTTAAACAGAAGCGA
AGTAGTTTTAAACTATAATATAGTAATCACAACTGAGCATCCCAAACAAT
GAAGTACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCA
AACAACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTT
TTGTGGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGT
CATCCATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCA
GCGATCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCT
GTCTTCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAA
TGGAGGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCA
GTTTCATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGC
AATGTGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCA
CATCAATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGT
GCACCAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAG
AACAACTCCGGCAATTTCAGTAATCCTCTCGAGTATGTACCGAGCCATCC
ATAACTGATCACCAGAAGAGATACCCACACAGGGACCCACTTGGAATTCC
CACTGACCCGGCATAACTTCACCGTTAATGCCACTGATGTTAATTCCAGC
GTAAAGGCAAGCTTTGTAGTGAGAATTCACAATGTCTCGGCC
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