CB290456

Overview
NameCB290456
Unique NameCB290456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 9.757e-87
Identity = 149/189 (78.84%), Postives = 166/189 (87.83%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDI ++HYKACLYAGINISG NGEVMPGQWE+QVGP VGI +GD +W++RYILERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR DGG +VIKKAI  L  RH  HI+AYGEGNERRLTG HETA I+ FSWGVANRG SIRVGRDTE +GKGY EDRRPASNMDPYVVT+++AETTILW+P
Sbjct:  224 GRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYVVTALLAETTILWEP 412          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 4.842e-86
Identity = 146/189 (77.25%), Postives = 165/189 (87.30%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDI ++HYKACLYAGINISG NGEVMPGQWE+QVGP VGI +GD +W++RYILERITE AGVVL+ DPKPI+GDWNGAG H NYSTK+MR DGG + IK+AI  L  RH  HI+AYGEGNERRLTG+HETA I TFSWGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY+VT ++AETTILW+P
Sbjct:  219 GRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKTMREDGGFEEIKRAILNLSLRHDLHISAYGEGNERRLTGKHETASIGTFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTGLLAETTILWQP 407          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 315.079 bits (806), Expect = 3.139e-85
Identity = 148/189 (78.31%), Postives = 162/189 (85.71%), Query Frame = -1
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDI ++HYKACLYAGI ISG NGEVMPGQWE+QVGP VGI +GD +W +RYILERITE AGVVL+ DPKPI+GDWNGAG H NYST SMR DGG DVIKKAI  L  RH  HIAAYGEGNERRLTG HETA I+ FSWGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY VT+++AETTILW+P
Sbjct:  230 GRDISDAHYKACLYAGIEISGTNGEVMPGQWEYQVGPSVGIDAGDHIWASRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTLSMREDGGFDVIKKAILNLSLRHDLHIAAYGEGNERRLTGLHETASISDFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYTVTALLAETTILWEP 418          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.461e-74
Identity = 132/148 (89.19%), Postives = 140/148 (94.59%), Query Frame = -1
Query:  399 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASI 842
            GRDIV+SHYKACLYAGINISGIN EVMPGQWEFQVGP +GIS+GD+LW+ARYILERITEIAGVVLS DPKPI GDWNGAGAH NYSTKSMRNDGG +VIK+AIEKL KRH EHIAAYGEGNERRLTGRHETADI+TFSWGVANRGASI
Sbjct:  168 GRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGPSIGISAGDELWVARYILERITEIAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEVIKQAIEKLEKRHNEHIAAYGEGNERRLTGRHETADISTFSWGVANRGASI 315          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 9.472e-74
Identity = 133/187 (71.12%), Postives = 150/187 (80.21%), Query Frame = -1
Query:  279 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 839
            RD++ +HY+ACLYAGINISGIN EVMP QWEFQVGPC GIS GD LWMARY+L RI E  GV +SF PKP+KG+WNGAG H N+STK+MR  GG+  I+ AIEKL KRH EHIA YGE N+ RLTGRHET  I+ FS GVANRGASIRV R    +G GY EDRRPASN+DPY VTS+IAETTIL K
Sbjct:  168 RDLIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWGVKVSFHPKPLKGEWNGAGCHTNFSTKAMREAGGMKFIEDAIEKLAKRHDEHIAVYGEDNDLRLTGRHETGHISNFSSGVANRGASIRVPRHVASQGYGYLEDRRPASNIDPYRVTSIIAETTILDK 354          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 2.110e-73
Identity = 132/187 (70.59%), Postives = 148/187 (79.14%), Query Frame = -1
Query:  279 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 839
            RD++ +HY+ACLYAG+NISGIN EVMP QWEFQVGPC GIS GD LWMARY+L R+ E  GV +SF PKP++GDWNGAGAH NYST +MR  GG+  I+ AIEKL KRH EHIA YGE NE RLTGRHET  I TFS GVANRGASIRV R    +G GY EDRRPASN+DPY VT +I ETTIL K
Sbjct:  168 RDLIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLIRVAEQWGVKVSFHPKPLQGDWNGAGAHTNYSTLAMREPGGMKYIEAAIEKLAKRHDEHIAVYGEDNEMRLTGRHETGHIGTFSSGVANRGASIRVPRHVANKGYGYLEDRRPASNIDPYRVTGIIIETTILDK 354          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.701e-73
Identity = 130/185 (70.27%), Postives = 148/185 (80.00%), Query Frame = -1
Query:  285 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 839
            RD++ +HY+ACLY+GINISGIN EVMP QWEFQVGPC GIS GD LWMARY+L RI E   V +SF PKP++GDWNGAG H NYSTK+MR  GG+ VI++AIEKL KRH EHIA YGE N+ RLTGRHET  I  FS GVANRGASIRV R    +G GY EDRRPASN+DPY VTS+I ETT+L
Sbjct:  168 RDLIEAHYRACLYSGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWAVKVSFHPKPLQGDWNGAGCHTNYSTKAMREPGGMKVIEEAIEKLSKRHDEHIAVYGEDNDLRLTGRHETGHIGAFSSGVANRGASIRVPRHVAAQGYGYLEDRRPASNIDPYRVTSIIVETTLL 352          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.701e-73
Identity = 128/182 (70.33%), Postives = 146/182 (80.22%), Query Frame = -1
Query:  294 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 839
            RD++ +HY+ACLYAGINISGIN EVMP QWEFQVGPC GIS GDQLWMARY L R+ E  GV +SF PKP+KGDWNGAG H N STK MR  GG+  I++AIEKL KRH EHI  YG  NE+RLTGRHETA + +FS GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  170 RDVIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDQLWMARYFLHRVAEEFGVKISFHPKPLKGDWNGAGCHTNVSTKDMRVPGGMKYIEQAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMTSFSSGVANRGASIRIPRPVAKEGFGYFEDRRPASNIDPYLVTGIMCET 351          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_SUIBO (Glutamine synthetase OS=Suillus bovinus GN=GLNA PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 3.047e-72
Identity = 129/187 (68.98%), Postives = 145/187 (77.54%), Query Frame = -1
Query:  279 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 839
            RD++ +HY+ACLYAG+NISGIN EVMP QWEFQVGPC GIS GD LWMARY+L RI E  G+ +SF PKP+ GDWNGAG H NYSTK MR  GG+  I +AIEKL KRH EHIA YGE N+ RLTGRHET  I  FS GVANRGASIRV R    +G GY EDRRPASN+DPY VT +I ETT+L K
Sbjct:  168 RDLIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWGIKVSFHPKPLAGDWNGAGCHTNYSTKVMREPGGMKYIDEAIEKLSKRHAEHIAVYGEDNDLRLTGRHETGHIGDFSSGVANRGASIRVPRHVAAQGYGYLEDRRPASNIDPYRVTGIIVETTVLDK 354          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 3.369e-71
Identity = 122/182 (67.03%), Postives = 142/182 (78.02%), Query Frame = -1
Query:  294 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 839
            RD++ +HY+ACLYAG+ ISGIN EVMP QWEFQVGPC GI  GDQLWMARY L R+ E  G+ +SF PKP+KGDWNGAG H N STK MR  GG+  I++AIEKL KRH EHI  YG  N+ RLTGRHETA +  FS GVANRG+SIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  170 RDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHTNVSTKEMRQPGGMKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCET 351          
The following BLAST results are available for this feature:
BLAST of CB290456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA2_ORYSJ9.757e-8778.84Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNAC_MAIZE4.842e-8677.25Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_HORVU3.139e-8578.31Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA3_LUPAN1.461e-7489.19Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLNA_AGABI9.472e-7471.12Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_AMAMU2.110e-7370.59Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_HEBCY4.701e-7370.27Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_CANGA4.701e-7370.33Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_SUIBO3.047e-7268.98Glutamine synthetase OS=Suillus bovinus GN=GLNA PE... [more]
GLNA_YEAST3.369e-7167.03Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290456 ID=CB290456; Name=CB290456; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTTTTTTTGCTAAAATCTTCTTTACTTTTTAAACAGAAGCGA
AGTAGTTTTAAACTATAATATAGTAATCACAACTGAGCATCCCAAACAAT
GAAGTACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCA
AACAACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTT
TTGTGGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGT
CATCCATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCA
GCGATCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCT
GTCTTCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAA
TGGAGGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCA
GTTTCATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGC
AATGTGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCA
CATCAATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGT
GCACCAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAG
AACAACTCCGGCAATTTCAGTAATCCTCTCGAGTATGTACCGAGCCATCC
ATAACTGATCACCAGAAGAGATACCCACACAGGGACCCACTTGGAATTCC
CACTGACCCGGCATAACTTCACCGTTAATGCCACTGATGTTAATTCCAGC
GTAAAGGCAAGCTTTGTAGTGAGAATTCACAATGTCTCGGCC
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