CB290456

Overview
NameCB290456
Unique NameCB290456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.369e-71
Identity = 124/182 (68.13%), Postives = 144/182 (79.12%), Query Frame = -1
Query:  294 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 839
            RD++ +HY+ACLYAG+NISGIN EVMP QWEFQVGPC GI+  DQLW+ARY L R+ E  GV +S  PKP+KGDWNGAG H N STK MR  GG+  I+ AIEKL KRH EHI  YG  NE+RLTGRHETA ++TFS GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  172 RDVIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGIAMADQLWIARYFLHRVAEEFGVKVSLHPKPLKGDWNGAGCHTNVSTKLMRAPGGMKYIEDAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMSTFSSGVANRGASIRIPRSVNKEGYGYFEDRRPASNIDPYLVTGIMCET 353          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.505e-71
Identity = 123/182 (67.58%), Postives = 144/182 (79.12%), Query Frame = -1
Query:  294 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 839
            RD+V +HY+ACLYAG+ ISGIN EVMP QWEFQVGPC GI+ GD+LW+ RY+L R+ E  GV +SF PKP+KGDWNGAG H N ST+ MR  GG+  I++AI+KL KRH EHI  YG  NE RLTGRHETA + TFS GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT +I ET
Sbjct:  169 RDVVEAHYRACLYAGLRISGINAEVMPSQWEFQVGPCTGITMGDELWVGRYLLHRVAEEFGVKVSFHPKPLKGDWNGAGCHTNVSTREMRQPGGMRYIEEAIDKLSKRHKEHIKLYGSDNELRLTGRHETASMATFSSGVANRGASIRIPRSVSKEGFGYFEDRRPASNIDPYLVTGIICET 350          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.280e-70
Identity = 122/182 (67.03%), Postives = 144/182 (79.12%), Query Frame = -1
Query:  294 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 839
            RD+V +HY+ACLY+GINISGIN EVMP QWE+QVGPC GIS  D+LWM+RY+L R+ E  G+ +SF PKP++GDWNGAG H N STKSMR  GG+  I+ AIEKL  RH EHIA YGE N+ RLTGRHET  I +FS GVANRG SIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  161 RDVVEAHYRACLYSGINISGINAEVMPSQWEYQVGPCEGISMADELWMSRYLLHRVAEEFGIKISFHPKPLQGDWNGAGCHTNVSTKSMREPGGMKHIEAAIEKLAARHKEHIAVYGEDNDMRLTGRHETGSIGSFSSGVANRGCSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMTET 342          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.852e-70
Identity = 122/182 (67.03%), Postives = 144/182 (79.12%), Query Frame = -1
Query:  294 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 839
            RDIV +HY+ACLYAG+ ISGIN EVMP QWE+QVGPC GI  GD LW++R++L R+ E  GV +SFDPKPIKGDWNGAG H N ST S R +GGI  I+  ++KL  RH EHIA YGEGNE RLTGRHET +I+ FS+GVA+RG SIR+ R   K+GKGYFEDRRPASN DPY +T +IAET
Sbjct:  158 RDIVEAHYRACLYAGVKISGINAEVMPSQWEYQVGPCHGIEMGDHLWISRFLLHRVAEEFGVKISFDPKPIKGDWNGAGLHTNVSTTSTRAEGGIKAIESYMKKLEARHVEHIAVYGEGNEERLTGRHETGNIDKFSYGVADRGGSIRIPRQVAKDGKGYFEDRRPASNADPYQITGIIAET 339          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.415e-69
Identity = 119/182 (65.38%), Postives = 145/182 (79.67%), Query Frame = -1
Query:  294 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 839
            RDIV +HYK CLYAG+ ISG N EVMP QWEFQVGPC GI  GD LW+AR++L R++E  G  +SFDPKPI GDWNGAG H N+ST++MR +GG+  I+ AI+KL  RH EHIA YGEGN++RLTGRHET  I++F++GVANRGASIR+ R+   +G GYFEDRRPASN DPY +T +I ET
Sbjct:  174 RDIVEAHYKCCLYAGVKISGTNAEVMPAQWEFQVGPCDGIEMGDHLWLARFLLHRVSEEFGAKVSFDPKPIPGDWNGAGLHTNFSTENMRKEGGMKYIEDAIKKLEARHKEHIAVYGEGNDKRLTGRHETGSIDSFTYGVANRGASIRIPRECGAKGYGYFEDRRPASNADPYQITGIIMET 355          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.414e-69
Identity = 122/182 (67.03%), Postives = 145/182 (79.67%), Query Frame = -1
Query:  294 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 839
            RDIV++HYKACLY+G+ ISG N EVMP QWEFQVGPCVGI  GD LW+AR++L RI E  G  +S DPKPI GDWNGAG H+N+STK MR +GG+  I+ AI+KL  RH EHIA YGEGNE+RLTGRHET  I+ FS+GVANRGASIR+ R+   +G GYFEDRRPASN DPY +T ++ ET
Sbjct:  172 RDIVDAHYKACLYSGVKISGTNAEVMPAQWEFQVGPCVGIEMGDHLWLARFLLARIAEEFGAKVSVDPKPIPGDWNGAGLHSNFSTKEMRVEGGMKHIEAAIKKLEGRHKEHIAVYGEGNEKRLTGRHETGAIDQFSYGVANRGASIRIPREYTAKGYGYFEDRRPASNADPYRITGILMET 353          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 9.174e-69
Identity = 125/190 (65.79%), Postives = 143/190 (75.26%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRD+V SHYKACLYAGI I G N EVMP QWEFQVGPC GI  GD LWMAR+IL R+ E  GVV + DPKP+ G+WNGAG H NYST+SMR +GG+  I+ AIEKLGKRH  HI  Y    G+ N RRLTG+HET+ I+ FS GVANRGASIR+ R   +EG GYFEDRRPA+N DPY VT  +  TTIL
Sbjct:  172 GRDVVESHYKACLYAGIKICGTNAEVMPSQWEFQVGPCEGIDMGDHLWMARFILHRVCEDFGVVATLDPKPMTGNWNGAGCHTNYSTESMRVEGGLKHIEDAIEKLGKRHDYHICVYDPRGGKDNSRRLTGQHETSSIHEFSAGVANRGASIRIPRQVGQEGYGYFEDRRPAANCDPYAVTEALVRTTIL 361          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 9.174e-69
Identity = 120/182 (65.93%), Postives = 141/182 (77.47%), Query Frame = -1
Query:  294 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 839
            RDIV +HYKACLYAGINISGIN EVMP QWE+QVGPC GI  GDQLWM+R++L RI E  GV +SF PKPI GDWNGAG H N STK  R +GGI  I+  +EK  KRH EHIA YG+ N+ RLTGRHET  I+ F++GVA+RGAS+R+ R     G GYFEDRRPAS++DPY+VT +I ET
Sbjct:  174 RDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAEDFGVKISFHPKPILGDWNGAGCHTNVSTKDTRAEGGIKAIESYLEKFAKRHKEHIAVYGDDNDLRLTGRHETGSIDKFTYGVADRGASVRIPRSVAMNGCGYFEDRRPASSIDPYLVTGIITET 355          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.198e-68
Identity = 118/182 (64.84%), Postives = 145/182 (79.67%), Query Frame = -1
Query:  294 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 839
            RD++ +HY+ACL+AG++ISGIN EVMP QWEFQVGPC GI  GD+LW+ARY+L+R+ E  GV +SF PKP+KG+WNGAG H N STKSMR  GG+  I+ A+ KL KRH EH+  YG  N++RLTGRHETA I  FS GVANRGAS+R+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  169 RDLIEAHYRACLHAGVDISGINAEVMPSQWEFQVGPCEGIQMGDELWIARYLLQRVAEEFGVKVSFHPKPLKGEWNGAGCHTNVSTKSMRLPGGMKSIEVALSKLAKRHKEHMLLYGADNDQRLTGRHETASIEGFSSGVANRGASVRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMVET 350          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.565e-68
Identity = 118/182 (64.84%), Postives = 145/182 (79.67%), Query Frame = -1
Query:  294 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 839
            RDIV +HYKACL+AGI ISGIN EV+P QWEFQVGPCVGI  GD LW++RY+L R+ E  GV +SF PKPI GDWNG+G H N ST++MR++GG+  I++AI+KL  RH EHIA YG+ N  RLTGRHET +I+ FS+GVA+RG+SIR+ R   KEGKGYFEDRRPASN  PY +T ++ ET
Sbjct:  172 RDIVEAHYKACLFAGIKISGINAEVLPSQWEFQVGPCVGIEMGDHLWISRYLLHRVAEEFGVKISFHPKPIPGDWNGSGLHTNVSTQAMRDEGGMKAIEEAIQKLSTRHAEHIAVYGDDNTLRLTGRHETGNIDAFSYGVADRGSSIRIPRSCAKEGKGYFEDRRPASNACPYQITGIMMET 353          
The following BLAST results are available for this feature:
BLAST of CB290456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_KLULA3.369e-7168.13Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_ASHGO7.505e-7167.58Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_YARLI1.280e-7067.03Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_EMENI2.852e-7067.03Glutamine synthetase OS=Emericella nidulans GN=gln... [more]
GLNA_NEUCR1.415e-6965.38Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_COLGL2.414e-6967.03Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA_XENLA9.174e-6965.79Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA_SCHPO9.174e-6965.93Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA_DEBHA1.198e-6864.84Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]
GLNA_TUBBO1.565e-6864.84Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bf04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290456 ID=CB290456; Name=CB290456; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTTTTTTTGCTAAAATCTTCTTTACTTTTTAAACAGAAGCGA
AGTAGTTTTAAACTATAATATAGTAATCACAACTGAGCATCCCAAACAAT
GAAGTACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCA
AACAACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTT
TTGTGGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGT
CATCCATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCA
GCGATCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCT
GTCTTCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAA
TGGAGGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCA
GTTTCATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGC
AATGTGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCA
CATCAATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGT
GCACCAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAG
AACAACTCCGGCAATTTCAGTAATCCTCTCGAGTATGTACCGAGCCATCC
ATAACTGATCACCAGAAGAGATACCCACACAGGGACCCACTTGGAATTCC
CACTGACCCGGCATAACTTCACCGTTAATGCCACTGATGTTAATTCCAGC
GTAAAGGCAAGCTTTGTAGTGAGAATTCACAATGTCTCGGCC
back to top