CB290456

Overview
NameCB290456
Unique NameCB290456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.014e-67
Identity = 119/184 (64.67%), Postives = 143/184 (77.72%), Query Frame = -1
Query:  288 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 839
            RDIV +HYKACLYAGI ISG N EVMP QWE+QVGPC+GI  GDQLW++R+ L RITE  G  +S  PKPI GDWNGAG H+N+STK+MR +GG+ VI++A++KL   H E IA YGE NE RLTGRHET  I++FSWGVANRG SIR  R+T  +G GYFEDRRPASN DPY VT  + + ++
Sbjct:  172 RDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCLGIEMGDQLWVSRFFLARITEEFGAKVSLHPKPIAGDWNGAGLHSNFSTKAMREEGGMKVIEEALKKLEPHHAECIAEYGEDNELRLTGRHETGSIDSFSWGVANRGTSIRAPRETAAKGYGYFEDRRPASNADPYRVTKALLQFSL 355          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 1.014e-67
Identity = 122/186 (65.59%), Postives = 144/186 (77.42%), Query Frame = -1
Query:  285 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDG-GIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 839
            RD + +HY+ACLYAGI ISGIN EVMP QWEFQVGPC GI  GD LWMAR++L RI E  G+  S  PKP+KGDWNGAG H+NYSTK MR  G G+  I+ AI+KL K+H EHIA YGE N+ RLTG+HETA + TFS GVANRGASIR+ R    +G GY EDRRPASN+DPY VT+++ ETT+L
Sbjct:  171 RDFIEAHYRACLYAGIKISGINAEVMPSQWEFQVGPCTGIEMGDHLWMARFLLLRIGEEWGITPSLHPKPLKGDWNGAGCHSNYSTKDMRTPGKGMAAIEDAIKKLEKKHLEHIAVYGEDNDLRLTGKHETASMTTFSAGVANRGASIRIPRHVGAQGYGYLEDRRPASNVDPYRVTAILVETTVL 356          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.260e-67
Identity = 119/187 (63.64%), Postives = 143/187 (76.47%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRN-DGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRD+   HY+ CL AG+NISG+N EV+P QWE+QVGPC GI+ GD +WM+RYI+ R+ E+  V +SFDPKPI GDWNG+G H NYSTK+ R    G  VI++   KL  RH  HIAAYGEGNERRLTG+HET+ ++ FSWGVANRG SIRVGR    E  GY+EDRRPASN+D YVVT +I ETTIL
Sbjct:  195 GRDVAEVHYRLCLAAGVNISGVNAEVLPSQWEYQVGPCEGITMGDHMWMSRYIMYRVCEMFNVEVSFDPKPIPGDWNGSGGHTNYSTKATRTAPDGWKVIQEHCAKLEARHAVHIAAYGEGNERRLTGKHETSSMSDFSWGVANRGCSIRVGRMVPVEKSGYYEDRRPASNLDAYVVTRLIVETTIL 381          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 8.587e-67
Identity = 122/189 (64.55%), Postives = 141/189 (74.60%), Query Frame = -1
Query:  285 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 839
            RDIV++HY+ACLYAGI +SG N EVMP QWEFQVGPC GIS GD LWMAR++L RI+E  G+V + DPKP+ GDWNGAGAH N STK+MR DGGI  I+KA+ KL K H  HI AY    G+ N RRLTG+HET+ IN FS GVANRG SIR+ R    +GKGYFEDRRP+SN DPY V   I  T  L
Sbjct:  179 RDIVDAHYRACLYAGIKVSGTNAEVMPAQWEFQVGPCEGISIGDDLWMARFLLHRISEEFGIVSTLDPKPMPGDWNGAGAHTNVSTKAMREDGGIRDIEKAVAKLSKCHERHIRAYDPKQGQDNARRLTGKHETSSINDFSAGVANRGCSIRIPRGVNDDGKGYFEDRRPSSNCDPYSVVEAILRTICL 367          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_DUNSA (Glutamine synthetase (Fragment) OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.263e-66
Identity = 113/186 (60.75%), Postives = 143/186 (76.88%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDI   HY+ CL+AGI ISG+NGEV+P QWE+QVGP  GI+ GDQ+WM+RY++ R+ E+  V ++FDPKPI GDWNG+G H N+S +   +       + + +KLGKRH  HIAAYGEGNERRLTG+HET+ +N FSWGVANRG SIRVGR    E  GY+EDRRP+SN+DPYVVT ++ ETT+L
Sbjct:   49 GRDIPEVHYRCCLHAGIQISGVNGEVLPSQWEYQVGPVEGIAMGDQMWMSRYLMYRVAELFNVEVTFDPKPIPGDWNGSGGHVNFSNRQPESPPAGKQSRSSAKKLGKRHRWHIAAYGEGNERRLTGKHETSSMNDFSWGVANRGCSIRVGRMVPVEKCGYYEDRRPSSNLDPYVVTRLLVETTLL 234          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.262e-66
Identity = 120/190 (63.16%), Postives = 142/190 (74.74%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDIV +HY+ACLYAG+ I G N EVMP QWEFQVGPC GI  GD LW+AR+IL R+ E  GV++SFDPKPI G+WNGAG H N+STK+MR DGG+  I++AIEKL KRH  HI AY    G  N RRLTG HET+ I+ FS GVANRGASIR+ R+   E KGYFEDR P++N DPY VT  +  T +L
Sbjct:  172 GRDIVEAHYRACLYAGVKIGGTNAEVMPAQWEFQVGPCEGIEMGDHLWIARFILHRVCEDFGVIVSFDPKPIPGNWNGAGCHTNFSTKNMREDGGLKHIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSSIHEFSAGVANRGASIRIPRNVGHEKKGYFEDRGPSANCDPYAVTEALVRTCLL 361          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 7.269e-66
Identity = 117/190 (61.58%), Postives = 143/190 (75.26%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDIV +HY+ACLYAGI +SG N EVM  QWE+QVGPC GI  GD LW++R+IL R+ E  G++ SFDPKPI G+WNGAG H N+STK+MR+DGG+  I+ +IEKLGKRH  HI AY    G  N R LTG HET++IN FS GVANRGASIR+ R   ++ KGYFEDRRP++N DPY VT  +  T +L
Sbjct:  201 GRDIVEAHYRACLYAGIELSGTNAEVMAAQWEYQVGPCEGIQMGDHLWISRFILHRVCEDFGIIASFDPKPIPGNWNGAGCHTNFSTKAMRDDGGLKYIEDSIEKLGKRHQYHIRAYDPKGGLDNARALTGHHETSNINEFSAGVANRGASIRIPRSVGQDKKGYFEDRRPSANCDPYAVTEALVRTCLL 390          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 250.751 bits (639), Expect = 7.269e-66
Identity = 118/190 (62.11%), Postives = 143/190 (75.26%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDIV +HY+ACLYAG+ I+G N EVMP QWEFQ+GPC GI  GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AI+KL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DPY VT  I  T +L
Sbjct:  172 GRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWIARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.619e-65
Identity = 117/181 (64.64%), Postives = 141/181 (77.90%), Query Frame = -1
Query:  297 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE 839
            RDIV +HYKACLYAGI ISG N EVMP QWE+QVGPC GI+ GDQLW++R+ L R+ E  G  +S  PKPI GDWNG G H+N+STK+MR +GG+ VI++A++KL   H E IA YGE NE RLTGRHET  I++FSWGVANRG SIRV R+T  +G GYFEDRRPASN DPY VT ++ +
Sbjct:  170 RDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCTGIAMGDQLWISRFFLHRVAEEFGAKVSLHPKPIAGDWNG-GLHSNFSTKAMREEGGMKVIEEALKKLEPHHVECIAEYGEDNELRLTGRHETGSIDSFSWGVANRGTSIRVPRETAAKGYGYFEDRRPASNADPYRVTKVLLQ 349          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 249.595 bits (636), Expect = 1.619e-65
Identity = 118/190 (62.11%), Postives = 142/190 (74.74%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDIV +HY+ACLYAGI I G N EVMP QWEFQ+GPC GI  GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AIEKL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  172 GRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCLL 361          
The following BLAST results are available for this feature:
BLAST of CB290456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_FUSSH1.014e-6764.67Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_CRYNE1.014e-6765.59Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA1_CHLRE2.260e-6763.64Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA2_DROME8.587e-6764.55Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA_DUNSA3.263e-6660.75Glutamine synthetase (Fragment) OS=Dunaliella sali... [more]
GLNA_CHICK4.262e-6663.16Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]
GLNA_SQUAC7.269e-6661.58Glutamine synthetase, mitochondrial OS=Squalus aca... [more]
GLNA_MOUSE7.269e-6662.11Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_GIBFU1.619e-6564.64Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_BOVIN1.619e-6562.11Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290456 ID=CB290456; Name=CB290456; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTTTTTTTGCTAAAATCTTCTTTACTTTTTAAACAGAAGCGA
AGTAGTTTTAAACTATAATATAGTAATCACAACTGAGCATCCCAAACAAT
GAAGTACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCA
AACAACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTT
TTGTGGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGT
CATCCATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCA
GCGATCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCT
GTCTTCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAA
TGGAGGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCA
GTTTCATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGC
AATGTGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCA
CATCAATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGT
GCACCAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAG
AACAACTCCGGCAATTTCAGTAATCCTCTCGAGTATGTACCGAGCCATCC
ATAACTGATCACCAGAAGAGATACCCACACAGGGACCCACTTGGAATTCC
CACTGACCCGGCATAACTTCACCGTTAATGCCACTGATGTTAATTCCAGC
GTAAAGGCAAGCTTTGTAGTGAGAATTCACAATGTCTCGGCC
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