CB290456

Overview
NameCB290456
Unique NameCB290456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 249.595 bits (636), Expect = 1.619e-65
Identity = 117/190 (61.58%), Postives = 143/190 (75.26%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDIV +HY+ACLYAG+ I+G N EVMP QWEFQ+GPC GI  GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AI+KL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E +GYFEDRRP++N DPY VT  I  T +L
Sbjct:  172 GRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKRGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 248.825 bits (634), Expect = 2.762e-65
Identity = 118/190 (62.11%), Postives = 142/190 (74.74%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDIV +HY+ACLYAGI I G N EVMP QWEFQ+GPC GI  GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AIEKL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  172 GRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNTRRLTGFHETSNINDFSAGVANRGASIRIPRTGGQEKKGYFEDRRPSANCDPFAVTEALIRTCLL 361          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_MACFA (Glutamine synthetase OS=Macaca fascicularis GN=GLUL PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 4.712e-65
Identity = 117/190 (61.58%), Postives = 143/190 (75.26%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDIV +HY+ACLYAG+ I+G N EVMP QWEFQ+GPC GIS GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AIEKL KRH  HI AY    G  N RRLTG HET++IN FS GVANR ASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  173 GRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 362          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 248.054 bits (632), Expect = 4.712e-65
Identity = 117/190 (61.58%), Postives = 143/190 (75.26%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDIV +HY+ACLYAG+ I+G N EVMP QWEFQ+GPC GIS GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AIEKL KRH  HI AY    G  N RRLTG HET++IN FS GVANR ASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  172 GRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 361          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 4.712e-65
Identity = 117/190 (61.58%), Postives = 143/190 (75.26%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDIV +HY+ACLYAGI I+G N EVMP QWEFQ+GPC GI  GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I+++IEKL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  172 GRDIVEAHYRACLYAGIKIAGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEESIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 361          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 247.669 bits (631), Expect = 6.154e-65
Identity = 118/190 (62.11%), Postives = 142/190 (74.74%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRDIV +HY+ACLYAGI I+G N EVMP QWEFQ+GPC GI  GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AI+KL KRH  HI AY    G  N RRLTG HET++IN FS GVANR ASIR+ R   +E KGYFEDRRP++N DPY VT  I  T +L
Sbjct:  172 GRDIVEAHYRACLYAGIKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLRCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRIVGQEKKGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.676e-62
Identity = 116/190 (61.05%), Postives = 140/190 (73.68%), Query Frame = -1
Query:  285 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 842
            GRD+V +HY+ACL AGINISG N +VMP QWEFQVGPC GI+ GD LWMARY+L R+ E   VV++ DPKPI GDWNGAG H N+ST++MR   GI  I+ AI+KL K H +HI AY    G+ NERRLTG +ET+ I+ FS GVANRGASIR+ R   +E  GY EDRRP+SN DPYVV+  +  T  L
Sbjct:  169 GRDVVEAHYRACLCAGINISGENAKVMPAQWEFQVGPCEGITMGDDLWMARYLLHRVAEDFDVVVTLDPKPIPGDWNGAGMHTNFSTEAMRGPNGILEIESAIDKLSKVHEKHIKAYDPHAGKDNERRLTGHYETSSIHDFSAGVANRGASIRIPRGVAEEKTGYLEDRRPSSNADPYVVSERLVRTICL 358          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 239.58 bits (610), Expect = 1.676e-62
Identity = 116/189 (61.38%), Postives = 139/189 (73.54%), Query Frame = -1
Query:  285 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 839
            RD+V +H  ACLYAGI+ +G N EVMP QWEFQ+GP  GI + D LW++RYIL+RI E  GVV++FDPKP++G WNGAGAH N+STK MR DGGI  I++AIEKL KRH  HI AY    G+ NERRL GR ET+ I+ FSWGVANR  S+RV R     GKGY EDRRP+SN DPY V + I  T +L
Sbjct:  210 RDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPA-GIKACDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRADGGIKAIEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSWGVANRAVSVRVPRGVATAGKGYLEDRRPSSNCDPYAVCNAIVRTCLL 397          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.960e-60
Identity = 112/191 (58.64%), Postives = 135/191 (70.68%), Query Frame = -1
Query:  288 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKP--IKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 842
            GR++V +HY+ACL+AG+NI G N EV PGQWEFQ+G C GI  GDQLWM+RYIL R+ E  GV +S DPKP    GDWNGAG H N+ST  MR  GGI  I+ A+  L + H E +  Y    GE N RRLTGRHET+  + FSWGVANRG SIR+ R    E KGY EDRRP+SN DPY VT+MIA++ +
Sbjct:  176 GREVVETHYRACLHAGLNIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMSRYILHRVAEQFGVCVSLDPKPKVTMGDWNGAGCHTNFSTAEMRAPGGIAAIEAAMTGLKRTHLEAMKVYDPHGGEDNLRRLTGRHETSSADKFSWGVANRGCSIRIPRQVAAERKGYLEDRRPSSNCDPYQVTAMIAQSIL 366          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.272e-58
Identity = 104/183 (56.83%), Postives = 137/183 (74.86%), Query Frame = -1
Query:  294 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 842
            GR I + H +ACLYAGI ISG N EV PGQ EFQ+GP  GI + DQLW+AR+ILE+I+E     + + PKP++GDWNG+G H N+ST+SMR++GG+ VI +A++KL  +H EH+  YG  N+ RLTG HETA I+ FS G+ +R  S+R+  DT K G GYFEDRRPA+N+DPY VTS+I +T
Sbjct:  166 GRRISDEHMEACLYAGIKISGTNLEVAPGQHEFQIGPVEGIDAADQLWIARFILEKISEHYDRYIVYHPKPLQGDWNGSGCHTNFSTESMRSEGGLTVIMEAVDKLRTKHSEHMKVYGIDNDLRLTGDHETASIDEFSHGIGSRQCSVRIPNDTVKNGYGYFEDRRPAANIDPYQVTSIILQT 348          
The following BLAST results are available for this feature:
BLAST of CB290456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_ACOCA1.619e-6561.58Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_PIG2.762e-6562.11Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]
GLNA_MACFA4.712e-6561.58Glutamine synthetase OS=Macaca fascicularis GN=GLU... [more]
GLNA_HUMAN4.712e-6561.58Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
GLNA_CANFA4.712e-6561.58Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA_RAT6.154e-6562.11Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_PANAR1.676e-6261.05Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]
GLNA1_DROME1.676e-6261.38Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_CAEEL5.960e-6058.64Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA_MIMIV4.272e-5856.83Putative glutamine synthetase OS=Acanthamoeba poly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290456 ID=CB290456; Name=CB290456; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTTTTTTTGCTAAAATCTTCTTTACTTTTTAAACAGAAGCGA
AGTAGTTTTAAACTATAATATAGTAATCACAACTGAGCATCCCAAACAAT
GAAGTACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCA
AACAACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTT
TTGTGGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGT
CATCCATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCA
GCGATCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCT
GTCTTCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAA
TGGAGGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCA
GTTTCATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGC
AATGTGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCA
CATCAATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGT
GCACCAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAG
AACAACTCCGGCAATTTCAGTAATCCTCTCGAGTATGTACCGAGCCATCC
ATAACTGATCACCAGAAGAGATACCCACACAGGGACCCACTTGGAATTCC
CACTGACCCGGCATAACTTCACCGTTAATGCCACTGATGTTAATTCCAGC
GTAAAGGCAAGCTTTGTAGTGAGAATTCACAATGTCTCGGCC
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