CB290456

Overview
NameCB290456
Unique NameCB290456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.120e-57
Identity = 102/186 (54.84%), Postives = 139/186 (74.73%), Query Frame = -1
Query:  288 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIK-GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 842
            GR +  +H +AC+ AG+ ISGIN EVMPGQWE+Q+GP   ++ GD++ ++R++L R+ E  G+V +F+PKP++ GDWNG GAH N+STK MR  GG+ VI++A+EKL K H EHI  YG GNE RLTG+HET DINTF  GVA+RG+SIR+      +G GY EDRRPA+N+DPY V  ++ +T +
Sbjct:  193 GRPLAEAHMEACMKAGLVISGINAEVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHTNFSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVADRGSSIRIPLPVMLKGYGYLEDRRPAANVDPYTVARLLIKTVL 378          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 222.246 bits (565), Expect = 2.769e-57
Identity = 107/189 (56.61%), Postives = 135/189 (71.43%), Query Frame = -1
Query:  285 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 839
            RDI+ +HY+ACLYAG+ I+G   EV   QWEFQ+GPC GI  GD LW+AR+IL R+ +  GV+ +FD KPI G+WNGAG H N+STK+MR + G+  IK+AIEKL KRH  HI AY    G  N RRLTG H+T++IN FS GVA+R ASIR+ R   +E KGYFE R P++N DP+ VT  I  T +L
Sbjct:  173 RDIMEAHYRACLYAGVKITGTYAEVKHAQWEFQIGPCEGIRMGDHLWVARFILHRVCKDFGVIATFDSKPIPGNWNGAGCHTNFSTKTMREENGLKHIKEAIEKLSKRHRYHIRAYDPKGGLDNARRLTGFHKTSNINDFSAGVADRSASIRIPRTVGQEKKGYFEARCPSANCDPFAVTEAIVRTCLL 361          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.857e-53
Identity = 102/185 (55.14%), Postives = 130/185 (70.27%), Query Frame = -1
Query:  294 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGK--RHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 842
            GRD+V +H   CL AG+ ISGIN EVMPGQWEFQVGP   +   D LW+AR++L R  E   V  + DPKP+KGDWNGAGAH N+STK+MR     D I  A E LG+  +  +H+  YG G + RLTG HETA  N +S+GV++RGAS+R+    EK+GKGY EDRRP +N+DPYVVT ++ +T
Sbjct:  150 GRDVVEAHLDNCLKAGLAISGINAEVMPGQWEFQVGPVSPLEVSDHLWVARWLLYRTAEDFDVAATLDPKPVKGDWNGAGAHTNFSTKAMRE--SYDAIITAAESLGEGSKPLDHVKNYGAGIDDRLTGLHETAPWNEYSYGVSDRGASVRIPWQVEKDGKGYIEDRRPNANVDPYVVTRLLVDT 332          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.872e-51
Identity = 99/183 (54.10%), Postives = 124/183 (67.76%), Query Frame = -1
Query:  294 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 842
            GR IV  H +ACL AG+ I G N EVM GQWEFQ+G     + GDQ+W+ R++L RI E  GV +SF  KPI GDWNGAGAH N+STK      G D I    E LG R  EH+  YG+G E RLTG+HETA  N +SWG ++RGAS+R+    EK  KG+ EDRRP +NMDPY+VT+++ +T
Sbjct:  145 GRQIVERHTQACLDAGLAIEGTNAEVMMGQWEFQIGVLPAPAIGDQIWLGRWLLHRIAEDYGVEVSFAAKPIPGDWNGAGAHTNFSTKQTME--GWDAIVTCCEALGTRVTEHVTHYGKGIEDRLTGKHETAPWNKYSWGASDRGASVRIPWAVEKAKKGWLEDRRPNANMDPYLVTALMIDT 325          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.605e-51
Identity = 99/185 (53.51%), Postives = 126/185 (68.11%), Query Frame = -1
Query:  294 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGK--RHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 842
            GR+IV  H   CL AG+ +SGIN EVMPGQWEFQVG    +   D +W+AR++L R+ E  GV  S D KP KGDWNGAGAH N+ST++MR   G D I  A E LG+  +  EH+  YG G E RLTG HETA  + +S+G ++RGAS+R+    E E KGY EDRRP +N+DPYVVT ++ +T
Sbjct:  147 GREIVEKHLDLCLAAGLGLSGINAEVMPGQWEFQVGALPPLEVSDHMWVARWLLHRVAEEFGVTASLDAKPAKGDWNGAGAHTNFSTRAMRE--GYDPIITACEALGQDDKPLEHVRQYGTGIEDRLTGAHETAPWDAYSYGASDRGASVRIPWQVEVEKKGYIEDRRPNANVDPYVVTRLMVDT 329          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.334e-43
Identity = 92/184 (50.00%), Postives = 116/184 (63.04%), Query Frame = -1
Query:  294 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKG-DWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEG-KGYFEDRRPASNMDPYVVTSMIAET 839
            R IV  H   CL AGIN  GIN EV  GQWEFQ+       + D++WMARY++ R+TE  G+ + F  KP+   DWNG+G HAN+ST+ MR  GG +  +  +    K   +HIA YG  N++RLTG+HETA  N FS+GVA+RGASIRV       G KGY EDRRP S  DPY + S I +T
Sbjct:  149 RKIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEMWMARYLMLRLTEKYGIDIEFHCKPLGDTDWNGSGMHANFSTEYMRTVGGKEYFEALMAAFDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRVPHSFVNNGYKGYLEDRRPNSQGDPYQIASQILKT 332          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.926e-42
Identity = 88/177 (49.72%), Postives = 114/177 (64.41%), Query Frame = -1
Query:  315 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKG-DWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRD-TEKEGKGYFEDRRPASNMDPYVV 839
            R+IV  H   CL AGIN  GIN EV  GQWEFQ+       + DQ+WMARY+L+R+TE  G+ + +  KP+   DWNG+G H N+STK +R  GG +  +  +    K   +HIA YG  N++RLTG+HETA  N FS+GVA+RGASIRV     + + KGY EDRRP S  DPY +
Sbjct:  146 REIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADQIWMARYLLQRLTEKYGIDIEYHCKPLGDTDWNGSGMHCNFSTKYLREVGGKEYFEALMASSDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRVPHSFIKNDYKGYLEDRRPNSQGDPYQI 322          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.839e-36
Identity = 83/175 (47.43%), Postives = 103/175 (58.86%), Query Frame = -1
Query:  321 RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKG-DWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRD-TEKEGKGYFEDRRPASNMDPY 839
            R IV  H   CL AGIN  GIN EV  GQWEFQ+       + D++ +ARY+L R+TE  G+ + F  KP+   DWNG+G HAN+ST  +R  GG D  +  +    K   +HI  YG  N  RLTG+HETA  + FS+GVA+RGASIRV          GY EDRR  S  DPY
Sbjct:  149 RQIVEEHLDICLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEVCVARYLLVRLTEKYGIDVEFHCKPLGDTDWNGSGMHANFSTAYLREVGGQDYFEALMAAFEKNLHDHINVYGPDNHLRLTGKHETAPWDKFSYGVADRGASIRVPHSFVNNAYPGYLEDRRANSQGDPY 323          
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_VITSX (Glutamine synthetase (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.682e-11
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = -1
Query:  411 RNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANR 572
            +NDGG +VIKK        H EHIAAYGEGNER     HETADINTF WGVANR
Sbjct:   11 KNDGGFEVIKK--------HKEHIAAYGEGNER-----HETADINTFLWGVANR 51          
The following BLAST results are available for this feature:
BLAST of CB290456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA2_CHLRE2.120e-5754.84Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA_CRIGR2.769e-5756.61Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]
GLNA2_STRVR1.857e-5355.14Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_FRAAL3.872e-5154.10Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_STRHY6.605e-5153.51Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_BRAJA1.334e-4350.00Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHILP1.926e-4249.72Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_RHIME7.839e-3647.43Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]
GLNA_VITSX6.682e-1166.67Glutamine synthetase (Fragments) OS=Vitis sp. PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290456 ID=CB290456; Name=CB290456; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTTTTTTTGCTAAAATCTTCTTTACTTTTTAAACAGAAGCGA
AGTAGTTTTAAACTATAATATAGTAATCACAACTGAGCATCCCAAACAAT
GAAGTACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCA
AACAACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTT
TTGTGGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGT
CATCCATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCA
GCGATCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCT
GTCTTCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAA
TGGAGGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCA
GTTTCATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGC
AATGTGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCA
CATCAATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGT
GCACCAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAG
AACAACTCCGGCAATTTCAGTAATCCTCTCGAGTATGTACCGAGCCATCC
ATAACTGATCACCAGAAGAGATACCCACACAGGGACCCACTTGGAATTCC
CACTGACCCGGCATAACTTCACCGTTAATGCCACTGATGTTAATTCCAGC
GTAAAGGCAAGCTTTGTAGTGAGAATTCACAATGTCTCGGCC
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