CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PROMS (Elongation factor Tu OS=Prochlorococcus marinus (strain AS9601) GN=tuf PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.098e-70
Identity = 128/180 (71.11%), Postives = 152/180 (84.44%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGE V++VG+++TR  TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHT+F   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++   +D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  220 SITGRGTVATGRIERGKVKVGEEVEIVGIRDTRVTTVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTQFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKILK 399
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PROM9 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9312) GN=tuf PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.098e-70
Identity = 128/180 (71.11%), Postives = 152/180 (84.44%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGE V++VG+++TR  TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHT+F   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++   +D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  220 SITGRGTVATGRIERGKVKVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTQFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKILK 399
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PROM0 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9301) GN=tuf PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.098e-70
Identity = 128/180 (71.11%), Postives = 152/180 (84.44%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGE V++VG+++TR  TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHT+F   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++   +D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  220 SITGRGTVATGRIERGKVKVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTQFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKILK 399
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CYAA5 (Elongation factor Tu OS=Cyanothece sp. (strain ATCC 51142) GN=tuf PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.098e-70
Identity = 125/180 (69.44%), Postives = 152/180 (84.44%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTVATGR+ERG +KVGET+++VG+++TR+ TVTGVEMFQKTLDE MAGDNVGLLLRG++K DI+RGMV+AKPG+ITPHT+F   VYVL KEEGGRH+PFF  YRPQF +RT DVTG +     D     +MVMPGDR+KM VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  230 SISGRGTVATGRIERGKVKVGETIEIVGIRDTRSTTVTGVEMFQKTLDEGMAGDNVGLLLRGIKKEDIERGMVIAKPGSITPHTQFEGEVYVLTKEEGGRHTPFFKNYRPQFYVRTTDVTGTIQDYTADDGSAVEMVMPGDRIKMTVELISPIAIEQGMRFAIREGGRTIGAGVVSKILK 409
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SYNPX (Elongation factor Tu OS=Synechococcus sp. (strain WH8102) GN=tuf PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 7.964e-70
Identity = 127/180 (70.56%), Postives = 149/180 (82.78%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGE +++VG+K+ R  TVTGVEMF+K L+E MAGDN GLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++    D     +MVMPGDR+KM  ELI PVA E GMRFAIREGG+T+GAGV+  IIE
Sbjct:  220 SITGRGTVATGRIERGKVKVGEEIEIVGIKDARKTTVTGVEMFRKLLEEGMAGDNCGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSAVEMVMPGDRIKMTGELICPVAMENGMRFAIREGGRTIGAGVVSKIIE 399
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_RHDSA (Elongation factor Tu, chloroplastic OS=Rhodomonas salina GN=tufA PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.040e-69
Identity = 122/180 (67.78%), Postives = 153/180 (85.00%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVG+T++++GL+ETR  T+TG+EMFQK+L+EA+AGDNVG+L+RG+QK DI+RGMVLA PG+ITPHTKF   VYVL KEEGGRH+PFF GYRPQF +RT DVTG ++    D    ++MVMPGDR+KM  +LI P+A E+GMRFAIREGG+TVGAGV+  I+E
Sbjct:  230 SITGRGTVATGRIERGQVKVGDTIEIIGLRETRTTTITGLEMFQKSLEEALAGDNVGILVRGIQKTDIERGMVLAAPGSITPHTKFEGEVYVLTKEEGGRHTPFFTGYRPQFYVRTTDVTGTIAQFTADDGSAAEMVMPGDRIKMTAQLIHPIAIEKGMRFAIREGGRTVGAGVVSKILE 409
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_ANAVT (Elongation factor Tu OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tuf PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.358e-69
Identity = 123/180 (68.33%), Postives = 154/180 (85.56%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVG+ V+LVG+++TRN TVTG+EMF+K+LDE MAGDN G+LLRG+QK DI+RGMVLAKPG+ITPHT+F   VYVL ++EGGR +PFFAGYRPQF +RT DVTG +    +D+ E  +MVMPGDR+K+ VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  230 SITGRGTVATGRIERGKVKVGDVVELVGIRDTRNTTVTGIEMFKKSLDEGMAGDNAGVLLRGIQKTDIERGMVLAKPGSITPHTQFEGEVYVLTEKEGGRKTPFFAGYRPQFYVRTTDVTGTIKAFTSDEGEAVEMVMPGDRIKVTVELINPIAIEQGMRFAIREGGRTIGAGVVSKIVK 409
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_ASTLO (Elongation factor Tu, plastid OS=Astasia longa GN=tufA PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.774e-69
Identity = 123/180 (68.33%), Postives = 155/180 (86.11%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG IKVGETV+L+GLK  ++ T+TG+EMFQK+LDEA+AGDNVG+LLRG+QK +++RGMV+AKPGTI PH KF + VY+L KEEGGRH+PFF GY+PQF +RT DVTG++    +D     +MVMPGD++KM+VEL+ P+A E+GMRFAIREGGKTVGAGVI +II+
Sbjct:  230 SITGRGTVATGRIERGKIKVGETVELIGLKNIKSTTITGLEMFQKSLDEAIAGDNVGVLLRGIQKNEVERGMVIAKPGTIQPHIKFNSQVYILTKEEGGRHTPFFEGYKPQFYVRTTDVTGKIESFKSDDGTTVQMVMPGDKIKMIVELVQPIAIEKGMRFAIREGGKTVGAGVIINIID 409
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_THEEB (Elongation factor Tu OS=Thermosynechococcus elongatus (strain BP-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.952e-69
Identity = 124/180 (68.89%), Postives = 153/180 (85.00%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG IK+ ETV+LVGL+ETR  TVTG+EMF+K+L+E +AGDN GLLLRG++K D++RGMV+AKPG+ITPHTKF   VYVL ++EGGR +PFFAGYRPQF +RT DVTG ++   +D    ++MVMPGDR+KM VELI P+A EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  230 SITGRGTVATGRIERGRIKLNETVELVGLRETRTTTVTGIEMFKKSLEEGIAGDNAGLLLRGLKKEDVERGMVIAKPGSITPHTKFEGEVYVLTEKEGGRKTPFFAGYRPQFYVRTTDVTGTITSFTSDDGSAAEMVMPGDRIKMTVELIQPIAIEQGMRFAIREGGRTIGAGVVSKIIE 409
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SYNS3 (Elongation factor Tu OS=Synechococcus sp. (strain CC9311) GN=tuf PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.952e-69
Identity = 127/180 (70.56%), Postives = 149/180 (82.78%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGE V++VG++E R  TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++    +     +MVMPGD ++M  ELI PVA E GMRFAIREGG+T+GAGV+  IIE
Sbjct:  220 SITGRGTVATGRIERGIVKVGEEVEVVGIREPRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGQVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVEMVMPGDNIQMTGELICPVAMELGMRFAIREGGRTIGAGVVSKIIE 399
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PROMS6.098e-7071.11Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROM96.098e-7071.11Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROM06.098e-7071.11Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_CYAA56.098e-7069.44Elongation factor Tu OS=Cyanothece sp. (strain ATC... [more]
EFTU_SYNPX7.964e-7070.56Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_RHDSA1.040e-6967.78Elongation factor Tu, chloroplastic OS=Rhodomonas ... [more]
EFTU_ANAVT1.358e-6968.33Elongation factor Tu OS=Anabaena variabilis (strai... [more]
EFTU_ASTLO1.774e-6968.33Elongation factor Tu, plastid OS=Astasia longa GN=... [more]
EFTU_THEEB3.952e-6968.89Elongation factor Tu OS=Thermosynechococcus elonga... [more]
EFTU_SYNS33.952e-6970.56Elongation factor Tu OS=Synechococcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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