CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU1_CAUSK (Elongation factor Tu 1 OS=Caulobacter sp. (strain K31) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 108/180 (60.00%), Postives = 139/180 (77.22%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGR+E+G +KVGE V++VG++  +  T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VL KPG+ITPHTKF+A  Y+L KEEGGRH+PFF  YRPQF  RT DVTG +        E  +M+MPGD  ++ VELI P+A +QG+RFAIREGG+TVGAGV+  I+E
Sbjct:  222 SISGRGTVVTGRIEKGVVKVGEEVEIVGIRAVQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLCKPGSITPHTKFVAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIIKL-----REGVEMIMPGDNAELDVELITPIAMDQGLRFAIREGGRTVGAGVVAKIVE 396          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SHEB8 (Elongation factor Tu OS=Shewanella baltica (strain OS185) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 112/179 (62.57%), Postives = 139/179 (77.65%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG +KVG+ V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  220 SISGRGTVVTGRVERGIVKVGDEVEIVGVRTTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLAKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PSYA2 (Elongation factor Tu OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 110/178 (61.80%), Postives = 141/178 (79.21%), Query Frame = -3
Query:  165 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 698
            SI+GRGTV TGRVE G ++VGE +++VG+++T+  T TGVEMF+K LDE  AG+N G+LLRG ++ D+QRG VLAKPG+ITPHTKF A VYVL KEEGGRH+PF  GYRPQF  RT DVTG +        + ++MVMPGD V+M VELI P+A ++G+RFAIREGG+TVGAGV+ ++
Sbjct:  222 SISGRGTVVTGRVESGIVRVGEEIEIVGIRDTQKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKREDVQRGQVLAKPGSITPHTKFDAEVYVLSKEEGGRHTPFLNGYRPQFYFRTTDVTGAIQL-----QDGTEMVMPGDNVEMGVELIHPIAMDKGLRFAIREGGRTVGAGVVANV 394          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_GYMST (Elongation factor Tu, chloroplastic (Fragment) OS=Gymnochlora stellata GN=tufA PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 111/159 (69.81%), Postives = 137/159 (86.16%), Query Frame = -3
Query:  225 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDE-ESKMVMPGDRVKMVVELIMPVACEQG 698
            SITGRGTVATGRVERG IK+G+TV++VGLKETR+ TVTG++MFQK L E++AGDNVG+LLRG+QK DIQRGMV+A+PG+ITPH  F A VYVL KEEGGRH+PF +GYRPQF +RT DVTG+V  + +D+D+ E KMV+PGDRV M VEL+ P+A E+G
Sbjct:  205 SITGRGTVATGRVERGGIKIGDTVEIVGLKETRSTTVTGLKMFQKMLQESIAGDNVGMLLRGIQKTDIQRGMVIAQPGSITPHVSFEAQVYVLTKEEGGRHTPFLSGYRPQFYVRTTDVTGKVESLKSDEDKSEMKMVVPGDRVTMSVELVQPIAIEKG 363          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_DESAD (Elongation factor Tu OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=tuf PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 111/180 (61.67%), Postives = 140/180 (77.78%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG IKVGE V++VG+++T   T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VL+ PG+I PHTKF A VYVL K+EGGRH+PFF+GYRPQF  RT D+TG V+      DE  +MVMPGD     VE+I P+A + G+RFAIREGG+TVGAGV+  I+E
Sbjct:  223 SISGRGTVVTGRVERGVIKVGEEVEIVGIRDTAKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKRDEVERGQVLSAPGSINPHTKFKAEVYVLSKDEGGRHTPFFSGYRPQFYFRTTDITGVVTL-----DEGVEMVMPGDNATFNVEMINPIAMDPGLRFAIREGGRTVGAGVVTEILE 397          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_BORT9 (Elongation factor Tu OS=Borrelia turicatae (strain 91E135) GN=tuf PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 115/180 (63.89%), Postives = 138/180 (76.67%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTVATGR+ERG IKVG+ V++VG++ETR  TVTGVEMFQK L++  AGDNVGLLLRGV K DI+RG V+A  GTITPH KF A +Y L KEEGGRH PFF+GYRPQF  RT DVTG VS       E  +MVMPGD V +VVELI  +A ++ + FA+REGG+TV +G I  I+E
Sbjct:  221 SISGRGTVATGRIERGVIKVGQEVEIVGIRETRKTTVTGVEMFQKILEQGQAGDNVGLLLRGVDKKDIERGQVIAAIGTITPHKKFKASIYCLTKEEGGRHKPFFSGYRPQFFFRTTDVTGMVSL------EGKEMVMPGDNVDIVVELISSIAMDKNVEFAVREGGRTVASGRILEILE 394          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_BACSU (Elongation factor Tu OS=Bacillus subtilis GN=tuf PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 117/181 (64.64%), Postives = 141/181 (77.90%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKE-TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG +KVG+ V+++GL+E  +  TVTGVEMF+K LD A AGDN+G LLRGV + +IQRG VLAKPGTITPH+KF A VYVL KEEGGRH+PFF+ YRPQF  RT DVTG +        E  +MVMPGD  +M VELI  +A E+G RF+IREGG+TVG+GV+ +I E
Sbjct:  221 SITGRGTVATGRVERGQVKVGDEVEIIGLQEENKKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSREEIQRGQVLAKPGTITPHSKFKAEVYVLSKEEGGRHTPFFSNYRPQFYFRTTDVTGIIHL-----PEGVEMVMPGDNTEMNVELISTIAIEEGTRFSIREGGRTVGSGVVSTITE 396          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_AZOSE (Elongation factor Tu OS=Azoarcus sp. (strain EbN1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 112/180 (62.22%), Postives = 138/180 (76.67%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG +KVGE V++VG+K T   T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VL KPG+I PHT F   VYVL KEEGGRH+PFF  YRPQF  RT DVTG +     +  E ++MVMPGD V + V+L+ P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  222 SISGRGTVVTGRVERGIVKVGEEVEIVGIKATVKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLCKPGSIKPHTHFTGEVYVLSKEEGGRHTPFFNNYRPQFYFRTTDVTGSI-----ELPEGTEMVMPGDNVSITVKLMAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_SHEB9 (Elongation factor Tu 2 OS=Shewanella baltica (strain OS195) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 112/179 (62.57%), Postives = 139/179 (77.65%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG +KVG+ V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  220 SISGRGTVVTGRVERGIVKVGDEVEIVGVRTTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLAKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_SHEB5 (Elongation factor Tu 2 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=tuf2 PE=3 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 112/179 (62.57%), Postives = 139/179 (77.65%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG +KVG+ V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  220 SISGRGTVVTGRVERGIVKVGDEVEIVGVRTTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLAKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_CAUSK1.664e-5960.00Elongation factor Tu 1 OS=Caulobacter sp. (strain ... [more]
EFTU_SHEB82.174e-5962.57Elongation factor Tu OS=Shewanella baltica (strain... [more]
EFTU_PSYA22.174e-5961.80Elongation factor Tu OS=Psychrobacter arcticus (st... [more]
EFTU_GYMST2.174e-5969.81Elongation factor Tu, chloroplastic (Fragment) OS=... [more]
EFTU_DESAD2.174e-5961.67Elongation factor Tu OS=Desulfovibrio salexigens (... [more]
EFTU_BORT92.174e-5963.89Elongation factor Tu OS=Borrelia turicatae (strain... [more]
EFTU_BACSU2.174e-5964.64Elongation factor Tu OS=Bacillus subtilis GN=tuf P... [more]
EFTU_AZOSE2.174e-5962.22Elongation factor Tu OS=Azoarcus sp. (strain EbN1)... [more]
EFTU2_SHEB92.174e-5962.57Elongation factor Tu 2 OS=Shewanella baltica (stra... [more]
EFTU2_SHEB52.174e-5962.57Elongation factor Tu 2 OS=Shewanella baltica (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
back to top