CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_VEREI (Elongation factor Tu OS=Verminephrobacter eiseniae (strain EF01-2) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 109/179 (60.89%), Postives = 138/179 (77.09%), Query Frame = -3 
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG IKVGE +++VG+++T+    TGVEMF+K LD+  AGDNVGLLLRG ++ D++RG VL KPG+I PHT F A VYVL K+EGGRH+PFF  YRPQF  RT DVTG +     +   + +MVMPGD V + V+LI P+A E+G+RFAIREGG+TVGAGV+  I+
Sbjct:  222 SISGRGTVVTGRVERGVIKVGEEIEIVGIRDTQKTICTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAI-----ELPADKEMVMPGDNVSITVKLINPIAMEEGLRFAIREGGRTVGAGVVAKIL 395
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_RHOPA (Elongation factor Tu OS=Rhodopseudomonas palustris GN=tuf1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 108/180 (60.00%), Postives = 139/180 (77.22%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG +KVG+ +++VG+++T+  T TGVEMF+K LD+  AGDN+G LLRG ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQF  RT DVTG V        E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ +IIE
Sbjct:  222 SISGRGTVVTGRVERGILKVGDEIEIVGIRDTQKTTCTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVAAIIE 396
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_LISW6 (Elongation factor Tu OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 114/179 (63.69%), Postives = 140/179 (78.21%), Query Frame = -3 
Query:  165 SITGRGTVATGRVERGTIKVGETVDLVGLKE-TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 698
            SITGRGTVATGRVERG +KVG+ V+++G++E ++   VTGVEMF+K LD A AGDN+G LLRGV + DIQRG VLAKPG+ITPHT F A  YVL KEEGGRH+PFF  YRPQF  RT DVTG V+       E ++MVMPGD +++ VELI P+A E G +F+IREGG+TVGAGV+ +I
Sbjct:  220 SITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVLAKPGSITPHTNFKAETYVLTKEEGGRHTPFFNNYRPQFYFRTTDVTGIVTL-----PEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREGGRTVGAGVVSNI 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_LISMO (Elongation factor Tu OS=Listeria monocytogenes GN=tuf PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 114/179 (63.69%), Postives = 140/179 (78.21%), Query Frame = -3 
Query:  165 SITGRGTVATGRVERGTIKVGETVDLVGLKE-TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 698
            SITGRGTVATGRVERG +KVG+ V+++G++E ++   VTGVEMF+K LD A AGDN+G LLRGV + DIQRG VLAKPG+ITPHT F A  YVL KEEGGRH+PFF  YRPQF  RT DVTG V+       E ++MVMPGD +++ VELI P+A E G +F+IREGG+TVGAGV+ +I
Sbjct:  220 SITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVLAKPGSITPHTNFKAETYVLTKEEGGRHTPFFNNYRPQFYFRTTDVTGIVTL-----PEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREGGRTVGAGVVSNI 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_LISMH (Elongation factor Tu OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 114/179 (63.69%), Postives = 140/179 (78.21%), Query Frame = -3 
Query:  165 SITGRGTVATGRVERGTIKVGETVDLVGLKE-TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 698
            SITGRGTVATGRVERG +KVG+ V+++G++E ++   VTGVEMF+K LD A AGDN+G LLRGV + DIQRG VLAKPG+ITPHT F A  YVL KEEGGRH+PFF  YRPQF  RT DVTG V+       E ++MVMPGD +++ VELI P+A E G +F+IREGG+TVGAGV+ +I
Sbjct:  220 SITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVLAKPGSITPHTNFKAETYVLTKEEGGRHTPFFNNYRPQFYFRTTDVTGIVTL-----PEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREGGRTVGAGVVSNI 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_LISMF (Elongation factor Tu OS=Listeria monocytogenes serotype 4b (strain F2365) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 114/179 (63.69%), Postives = 140/179 (78.21%), Query Frame = -3 
Query:  165 SITGRGTVATGRVERGTIKVGETVDLVGLKE-TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 698
            SITGRGTVATGRVERG +KVG+ V+++G++E ++   VTGVEMF+K LD A AGDN+G LLRGV + DIQRG VLAKPG+ITPHT F A  YVL KEEGGRH+PFF  YRPQF  RT DVTG V+       E ++MVMPGD +++ VELI P+A E G +F+IREGG+TVGAGV+ +I
Sbjct:  220 SITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVLAKPGSITPHTNFKAETYVLTKEEGGRHTPFFNNYRPQFYFRTTDVTGIVTL-----PEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREGGRTVGAGVVSNI 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_LISMC (Elongation factor Tu OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 114/179 (63.69%), Postives = 140/179 (78.21%), Query Frame = -3 
Query:  165 SITGRGTVATGRVERGTIKVGETVDLVGLKE-TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 698
            SITGRGTVATGRVERG +KVG+ V+++G++E ++   VTGVEMF+K LD A AGDN+G LLRGV + DIQRG VLAKPG+ITPHT F A  YVL KEEGGRH+PFF  YRPQF  RT DVTG V+       E ++MVMPGD +++ VELI P+A E G +F+IREGG+TVGAGV+ +I
Sbjct:  220 SITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVLAKPGSITPHTNFKAETYVLTKEEGGRHTPFFNNYRPQFYFRTTDVTGIVTL-----PEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREGGRTVGAGVVSNI 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_LISIN (Elongation factor Tu OS=Listeria innocua GN=tuf PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 114/179 (63.69%), Postives = 140/179 (78.21%), Query Frame = -3 
Query:  165 SITGRGTVATGRVERGTIKVGETVDLVGLKE-TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 698
            SITGRGTVATGRVERG +KVG+ V+++G++E ++   VTGVEMF+K LD A AGDN+G LLRGV + DIQRG VLAKPG+ITPHT F A  YVL KEEGGRH+PFF  YRPQF  RT DVTG V+       E ++MVMPGD +++ VELI P+A E G +F+IREGG+TVGAGV+ +I
Sbjct:  220 SITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVLAKPGSITPHTNFKAETYVLTKEEGGRHTPFFNNYRPQFYFRTTDVTGIVTL-----PEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREGGRTVGAGVVSNI 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_DESAH (Elongation factor Tu OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 113/180 (62.78%), Postives = 137/180 (76.11%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGR++RG IK GE V+LVG+++T     TGVEMF+K LDE  AGDNVGLLLRG ++  ++RG V+AKPGTITPHTKF A +Y L KEEGGRH+PFF+GYRPQF  RT DVTG +S       E  +M+MPGD   +  ELI P+A E+ +RFAIREGG+TVGAGVI  IIE
Sbjct:  223 SISGRGTVVTGRIDRGIIKTGEEVELVGIRDTTKTICTGVEMFRKLLDEGRAGDNVGLLLRGTKRDAVERGQVVAKPGTITPHTKFKAEIYCLSKEEGGRHTPFFSGYRPQFFFRTTDVTGVLSL-----PEGVEMIMPGDNAAITAELIAPIAMEKELRFAIREGGRTVGAGVIGEIIE 397
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_BUCAT (Elongation factor Tu OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 112/179 (62.57%), Postives = 138/179 (77.09%), Query Frame = -3 
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVE+G IKVGE V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG ++ +I+RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KM V LI P+A   G+RFAIREGG+TVGAGV+  ++
Sbjct:  220 SISGRGTVVTGRVEKGIIKVGEEVEIVGIKKTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEIERGQVLAKPGSIHPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSI-----ELPEGIEMVMPGDNIKMTVTLINPIAMADGLRFAIREGGRTVGAGVVSKVL 393
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_VEREI8.260e-5960.89Elongation factor Tu OS=Verminephrobacter eiseniae... [more]
EFTU_RHOPA8.260e-5960.00Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_LISW68.260e-5963.69Elongation factor Tu OS=Listeria welshimeri serova... [more]
EFTU_LISMO8.260e-5963.69Elongation factor Tu OS=Listeria monocytogenes GN=... [more]
EFTU_LISMH8.260e-5963.69Elongation factor Tu OS=Listeria monocytogenes ser... [more]
EFTU_LISMF8.260e-5963.69Elongation factor Tu OS=Listeria monocytogenes ser... [more]
EFTU_LISMC8.260e-5963.69Elongation factor Tu OS=Listeria monocytogenes ser... [more]
EFTU_LISIN8.260e-5963.69Elongation factor Tu OS=Listeria innocua GN=tuf PE... [more]
EFTU_DESAH8.260e-5962.78Elongation factor Tu OS=Desulfobacterium autotroph... [more]
EFTU_BUCAT8.260e-5962.57Elongation factor Tu OS=Buchnera aphidicola subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
back to top