CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SYNS9 (Elongation factor Tu OS=Synechococcus sp. (strain CC9902) GN=tuf PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.162e-69
Identity = 126/180 (70.00%), Postives = 149/180 (82.78%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGE V++VG+++ R  TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++    +     +MVMPGD ++M  ELI PVA E GMRFAIREGG+T+GAGV+  IIE
Sbjct:  220 SITGRGTVATGRIERGIVKVGEEVEVVGIRDPRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGQVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVEMVMPGDNIQMTGELICPVAMEMGMRFAIREGGRTIGAGVVSKIIE 399          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PROMA (Elongation factor Tu OS=Prochlorococcus marinus GN=tuf PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.162e-69
Identity = 127/180 (70.56%), Postives = 150/180 (83.33%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG + VGE V++VG+++TR  TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL K G+ITPHT+F   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++    D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  220 SITGRGTVATGRIERGKVTVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKKGSITPHTQFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSSVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIK 399          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAT (Elongation factor Tu, chloroplastic OS=Chlorokybus atmophyticus GN=tufA PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.742e-69
Identity = 126/181 (69.61%), Postives = 153/181 (84.53%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETR-NFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERGT+KVGE +++VGL+E      VTG+EMFQKTL+E++AGDNVG+LLRG+QK DI+RGMVLAKPGTI PH  F A VY+L KEEGGRH+PFF GYRPQF +RT DVTG++     D   E++MVMPGDR+KMVV+LI P+A E+GMRFAIREGG+TVGAGV+ +I+E
Sbjct:  230 SITGRGTVATGRVERGTVKVGEAIEIVGLREAPVTSIVTGLEMFQKTLEESVAGDNVGILLRGIQKKDIERGMVLAKPGTIKPHKSFEAQVYILNKEEGGRHTPFFQGYRPQFYVRTTDVTGKIESFQADDGSETQMVMPGDRIKMVVQLIQPIAIEKGMRFAIREGGRTVGAGVVFNILE 410          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_BIGNA (Elongation factor Tu, chloroplastic OS=Bigelowiella natans GN=tufA PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.742e-69
Identity = 123/180 (68.33%), Postives = 156/180 (86.67%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDE-ESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SITGRGTVATGRVERG +K+G+ V++VGL+ETR+ TVTG+EMFQK L E++AGDNVG+LLRG+QKADIQRGMV+A+PG+ITPH  F A VY+L KEEGGRH+PFF GYRPQF +RT DVTG++  + +D+D  E +MV+PGDRV M VEL+ P+A E+GMRFAIREGG+TVGAGV+ +++
Sbjct:  230 SITGRGTVATGRVERGGVKIGDVVEIVGLRETRSTTVTGLEMFQKMLQESIAGDNVGMLLRGIQKADIQRGMVVAQPGSITPHVSFDAQVYILTKEEGGRHTPFFKGYRPQFYVRTTDVTGKIESLKSDEDNTEMRMVVPGDRVTMSVELVQPIAIEKGMRFAIREGGRTVGAGVVSNVV 409          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP8 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 8801) GN=tuf PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.805e-69
Identity = 124/180 (68.89%), Postives = 153/180 (85.00%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTVATGR+ERG +KVGETV++VG++ T + TVTGVEMFQKTL+E +AGDNVGLLLRGV+K DI+RGMV+AKPG+ITPHT+F   VYVL KEEGGRH+PFF  Y+PQF +RT DVTG +    +D+ E  +MVMPGDR+KM VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  230 SISGRGTVATGRIERGKVKVGETVEIVGIRATSSTTVTGVEMFQKTLEEGLAGDNVGLLLRGVKKEDIERGMVIAKPGSITPHTQFEGEVYVLTKEEGGRHTPFFKNYKPQFYVRTTDVTGSIVDYTSDEGETVEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGVVSKILK 409          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SPIPL (Elongation factor Tu OS=Spirulina platensis GN=tuf PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.562e-68
Identity = 123/179 (68.72%), Postives = 148/179 (82.68%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SITGRGTV+T  +ERG +KVG+TV+L+G+K+TR  TVTG EMFQKTL+E MAGDNVGLLLRG+QK D+QRGMV+AKP +ITPHTKF A VY+LKKEEGGRH+PFF GYRPQF +RT DVTG +     D     +MV+PGDR+ M V+LI P+A EQGMRFAIREGG+TVGAGV+  I+
Sbjct:  231 SITGRGTVSTAGIERGKVKVGDTVELIGIKDTRTTTVTGAEMFQKTLEEGMAGDNVGLLLRGIQKNDVQRGMVIAKPKSITPHTKFEAEVYILKKEEGGRHTPFFKGYRPQFYVRTTDVTGTIDEFTADDGSTPEMVIPGDRINMTVQLICPIAIEQGMRFAIREGGRTVGAGVVAKIL 409          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PROMM (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9313) GN=tuf PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.562e-68
Identity = 123/180 (68.33%), Postives = 149/180 (82.78%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +K GE +++VG++++R  TVTGVEMF+K LDE +AGDN GLLLRG++K DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++    +     +MVMPGD +KM  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  220 SITGRGTVATGRIERGKVKKGEEIEIVGIRDSRKTTVTGVEMFRKDLDEGLAGDNCGLLLRGIEKEDIERGMVLVKPGSITPHTKFEGQVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVEMVMPGDNIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIE 399          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_MICAN (Elongation factor Tu OS=Microcystis aeruginosa (strain NIES-843) GN=tuf PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.370e-68
Identity = 123/180 (68.33%), Postives = 148/180 (82.22%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVG+ V+LVG++ETR  TVTG+EMF+K+LD+ MAGDN G+LLRG+QK DI+RGMV+AKPGTI PHT+F   VYVL KEEGGRH+PFF  YRPQF +RT DVTG +     D     +MVMPGDR+KM VELI P+A EQGMRFAIREGG+T+G+GVI  II+
Sbjct:  230 SITGRGTVATGRIERGIVKVGDNVELVGIRETRPTTVTGIEMFKKSLDQGMAGDNAGILLRGIQKTDIERGMVIAKPGTIKPHTQFEGEVYVLSKEEGGRHTPFFKNYRPQFYVRTTDVTGTIQDYTADDGSTVEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGSGVISKIIK 409          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PROM3 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9303) GN=tuf PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.707e-68
Identity = 122/180 (67.78%), Postives = 149/180 (82.78%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +K GE +++VG++++R  TVTGVEMF+K LDE +AGDN GLLLRG++K DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++    +     +MVMPGD +KM  ELI PVA EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  220 SITGRGTVATGRIERGKVKKGEEIEIVGIRDSRKTTVTGVEMFRKDLDEGLAGDNCGLLLRGIEKEDIERGMVLVKPGSITPHTKFEGQVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVEMVMPGDNIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIQ 399          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SCEOB (Elongation factor Tu, chloroplastic OS=Scenedesmus obliquus GN=tufA PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.454e-68
Identity = 126/189 (66.67%), Postives = 155/189 (82.01%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMN---------DKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERGT+KVGE V+L+GLK+T+   VTG+EMF+KTLDE MAGDNVG+LLRG+QK D++RGMVLAKPG+ITPHTKF A VYVL KEEGGRHSPF  GY+PQF +RT DVTG++    +          ++  +KM MPGDR+++ V+LI PVA E+GMRFAIREGG+TVGAGV+ +I+E
Sbjct:  230 SITGRGTVATGRVERGTLKVGENVELIGLKDTKATVVTGLEMFKKTLDETMAGDNVGVLLRGIQKKDVERGMVLAKPGSITPHTKFEAQVYVLTKEEGGRHSPFLVGYQPQFFIRTTDVTGKIVSFTHIQMKNPSSVAEEHSNKMAMPGDRIEVTVQLIYPVAVEKGMRFAIREGGRTVGAGVVTNILE 418          
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SYNS95.162e-6970.00Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_PROMA5.162e-6970.56Elongation factor Tu OS=Prochlorococcus marinus GN... [more]
EFTU_CHLAT6.742e-6969.61Elongation factor Tu, chloroplastic OS=Chlorokybus... [more]
EFTU_BIGNA6.742e-6968.33Elongation factor Tu, chloroplastic OS=Bigelowiell... [more]
EFTU_CYAP88.805e-6968.89Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_SPIPL2.562e-6868.72Elongation factor Tu OS=Spirulina platensis GN=tuf... [more]
EFTU_PROMM2.562e-6868.33Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_MICAN4.370e-6868.33Elongation factor Tu OS=Microcystis aeruginosa (st... [more]
EFTU_PROM35.707e-6867.78Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_SCEOB7.454e-6866.67Elongation factor Tu, chloroplastic OS=Scenedesmus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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