CB290482

Overview
NameCB290482
Unique NameCB290482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_METS5 (Putative thiazole biosynthetic enzyme OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2221 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE   V  + EV PG+   GM V EI   PRMGP FGAM++SG+K A   +K+L
Sbjct:  159 VDPLFISAKAVVDATGHDAEVISVASRKIPELGIV--IPGEKSAYSEIAEQLTVEQSGEVAPGLYAAGMAVTEIKAIPRMGPIFGAMLLSGKKVAEDIIKNL 258          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.890e-13
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = -3
Query:  502 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI-----GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 813
            +DP  + A+VV+   GHD        K++        G+I E P   AL     E  +V  TREV PG+IV GM    +   PRMGP FG M++SG+KAA +AL+ L Q
Sbjct:  155 VDPLAIRARVVIDGTGHDAAVCRVVQKKIPGAIVGESGVIGEKPMWAAL----GEKIVVDATREVYPGLIVAGMAATTVAAGPRMGPIFGGMLLSGEKAASIALEKLAQ 259          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_NATPD (Putative thiazole biosynthetic enzyme OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP5174A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.224e-13
Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = -3
Query:  505 SCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 819
            +C+DP  +EA +V+ + GHD          G   A G++     + GM +           + PG  ++ +  +EDA+V  T     G+IVTGM  A   G PRMGPTFGAM++SG++AA  AL  LG
Sbjct:  165 TCVDPIAVEADLVIDATGHDAVAVSKLQERGVLNAPGIEHADEHNTGMDQTGDDSYGAPGHDSPGHDSMWVGQSEDAVVEHTGLAHEGLIVTGMATATTYGLPRMGPTFGAMLLSGKRAAQAALDELG 292          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_METVS (Putative thiazole biosynthetic enzyme OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0663 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.224e-13
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = -3
Query:  502 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 813
            +DP  + AK V+ S GHD    +T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A L L+ L +
Sbjct:  160 VDPITISAKYVIDSTGHDASVVSTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLFVCGMTANAYHAGYRMGAIFGGMYLSGKKCAELILEKLNK 261          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.224e-13
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = -3
Query:  508 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE------------------------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 819
            +C+DP  +EA +V+ + GHD    A  VK+L   G++                         + PG  ++ +  +EDA+V  T     G++VTGM  A   G PRMGPTFGAM++SG++AA +AL  L
Sbjct:  168 TCVDPIAVEADLVIDATGHD----AMAVKKLDERGVLNAPGLEDEASGMDQTDDDTYGAPGHDSPGHDSMWVGESEDAVVEHTGLAHDGLVVTGMATATTYGLPRMGPTFGAMLVSGKRAAQVALDEL 291          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_SULSO (Putative thiazole biosynthetic enzyme OS=Sulfolobus solfataricus GN=SSO0436 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.183e-13
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+  TGM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYATGMAVTEVKGLPRMGPIFGAMVLSGKAVAGEITKDL 260          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.381e-13
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++  +  E+++ R TREV PG+ V GM         RMG  FG M +SG+K A L L+ L
Sbjct:  160 IDPITISAKYVIDSTGHDASVINTLARKNKDLGI--EVPGEKSMWADKGENSLTRNTREVFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAELILEKL 259          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_PYRIL (Putative thiazole biosynthetic enzyme OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1998 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.225e-12
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = -3
Query:  508 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 819
            S +DP   +AK V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+ V GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:  151 SHVDPLYTQAKAVLDATGHDAEVISIAARKVPELGI--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYVAGMAVCTVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_SULIY (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1786 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -3
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_SULIM (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=M1425_1670 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -3
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
The following BLAST results are available for this feature:
BLAST of CB290482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
THI4_METS56.497e-1439.22Putative thiazole biosynthetic enzyme OS=Metallosp... [more]
THI4_METTP1.890e-1340.37Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_NATPD3.224e-1336.72Putative thiazole biosynthetic enzyme OS=Natronomo... [more]
THI4_METVS3.224e-1338.46Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_HALMA3.224e-1335.16Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]
THI4_SULSO7.183e-1338.24Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METMP9.381e-1340.20Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_PYRIL1.225e-1237.50Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_SULIY1.600e-1237.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIM1.600e-1237.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bg07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290482 ID=CB290482; Name=CB290482; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTAGCACAAAAACAGAGTAAGCTCAGATCTTCATCA
TTGATCTTAATCACATCAGCACTGTCCCATTGGCTGATGCCTCAAGTTAT
AAACATACAAAGCAAAGAAAAGGGAACAGCCCAAGGGCAGTCTTACACAT
AATACAGATAACAAGGACTAGATACGCAACTGCAAATTCACCCCCGAAAA
ACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTG
CATGATGGACCGGAAACAAACACTTTATTCACAAAACCTCACAACATCAT
CTCATTATTCGCATCAACCATCCATCACAACCACCTAAATACAACTACTT
TTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGATGATGCCTG
TTATTATCAAATTAACCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAA
GATCAGCTCAGGGTGAACACCTCCCACATATGTACCGTCTAATGCATTCG
GCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATC
ATCATTGCTCCAAATGTTGGCCCCATTCTAGGAGCACCATCAATCTCGGC
AACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCCTGGTCAGCC
TCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGC
ACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTCCAGTGGCCCC
AAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTCGCTTCCATTA
CATTGGGATCCATGCAAGACTGTGTATCGTGATTCATTGACACCA
back to top