CB290482

Overview
NameCB290482
Unique NameCB290482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_SULIL (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=LS215_1798 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -3 
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260
[Close]
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_SULIK (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1717 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -3 
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260
[Close]
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_SULIA (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.27) GN=M1627_1786 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -3 
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260
[Close]
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.730e-12
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = -3 
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ L
Sbjct:  160 IDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKL 259
[Close]
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_PYRCJ (Putative thiazole biosynthetic enzyme OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_1555 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = -3 
Query:  502 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 813
            +DP   +AK V+ + GHD    +   +++  +G+  ++ G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L +
Sbjct:  153 VDPLYTQAKAVIDATGHDAEVVSVAARKVPELGL--QLQGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGRKVAEVVAKDLAE 254
[Close]
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_METM6 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1321 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -3 
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:  160 IDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259
[Close]
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_METM5 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0226 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -3 
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:  160 IDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259
[Close]
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_PYRAE (Putative thiazole biosynthetic enzyme OS=Pyrobaculum aerophilum GN=PAE0175 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = -3 
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP   +AK V+ + GHD    +   +++  +G+  +V G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L
Sbjct:  153 VDPLYTQAKAVIDATGHDAEVVSVAARKVPELGI--QVVGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGKKVAEVVYKDL 252
[Close]
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_THENV (Putative thiazole biosynthetic enzyme OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1052 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.355e-11
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = -3 
Query:  508 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 819
            S +DP   +A+ V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+   GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:  151 SHVDPLYTQARAVLDATGHDAEVISIASRKVPELGV--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYAAGMAVCAVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252
[Close]
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_SULIN (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1140 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.355e-11
Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = -3 
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK VV + GHD    +   +++  +G++  + G K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IAGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260
The following BLAST results are available for this feature:
BLAST of CB290482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
THI4_SULIL1.600e-1237.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIK1.600e-1237.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIA1.600e-1237.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METM72.730e-1238.24Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_PYRCJ4.656e-1233.65Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_METM64.656e-1237.25Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM54.656e-1237.25Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_PYRAE6.081e-1235.29Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_THENV1.355e-1135.58Putative thiazole biosynthetic enzyme OS=Thermopro... [more]
THI4_SULIN1.355e-1136.27Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290482 ID=CB290482; Name=CB290482; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTAGCACAAAAACAGAGTAAGCTCAGATCTTCATCA
TTGATCTTAATCACATCAGCACTGTCCCATTGGCTGATGCCTCAAGTTAT
AAACATACAAAGCAAAGAAAAGGGAACAGCCCAAGGGCAGTCTTACACAT
AATACAGATAACAAGGACTAGATACGCAACTGCAAATTCACCCCCGAAAA
ACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTG
CATGATGGACCGGAAACAAACACTTTATTCACAAAACCTCACAACATCAT
CTCATTATTCGCATCAACCATCCATCACAACCACCTAAATACAACTACTT
TTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGATGATGCCTG
TTATTATCAAATTAACCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAA
GATCAGCTCAGGGTGAACACCTCCCACATATGTACCGTCTAATGCATTCG
GCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATC
ATCATTGCTCCAAATGTTGGCCCCATTCTAGGAGCACCATCAATCTCGGC
AACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCCTGGTCAGCC
TCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGC
ACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTCCAGTGGCCCC
AAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTCGCTTCCATTA
CATTGGGATCCATGCAAGACTGTGTATCGTGATTCATTGACACCA
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