CB290482

Overview
NameCB290482
Unique NameCB290482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_META3 (Putative thiazole biosynthetic enzyme OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0798 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  + AK V+ + GHD     T  ++ + +G++  +PG K+L  +  E+ +++ T+E+ PG+ V GM      G  RMG  FG M ISG+  A + L+ L
Sbjct:  161 IDPLTINAKYVIDATGHDASVACTLARKNEDLGLV--IPGEKSLWADEGENGLLKYTKELFPGLFVCGMASNATHGGYRMGAVFGGMYISGKIVADMILEKL 260          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_METBF (Putative thiazole biosynthetic enzyme OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A2100 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = -3
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKS--IGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP ++  K+V+   GH+     T ++++ +  IG + ++ G K +     E  +V  T+E+ PG+IV GM       +PRMGP FG M++SG+KAA LAL+ L
Sbjct:  155 VDPLMIRTKLVIDGTGHEAVVCNTILRKIPNAKIGNLGKL-GEKPMWSEVGEQLVVDATKEIYPGLIVAGMAANAATCSPRMGPVFGGMLLSGEKAAKLALEKL 257          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = -3
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE---EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP  ++A  VV   GH     A  V  L   G++E   E P    +D + AE  +V  T E+ PG++V+GM V  + G PRMGP FG M++SGQK A +  + L
Sbjct:  153 VDPITVKASFVVDGTGHP----ANVVSLLAKRGLVEMKTEFP----MDADEAEKFVVDNTGEIFPGLLVSGMAVCAVHGGPRMGPIFGGMILSGQKVARIVSERL 249          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_METMA (Putative thiazole biosynthetic enzyme OS=Methanosarcina mazei GN=MM_0222 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.941e-11
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = -3
Query:  508 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE-EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 813
            +DP ++  K+V+   GHD     T ++++ +  + E  + G K +     E   V  T+E+ PG+IV GM       APRMGP FG M++SG+KAA LAL  L
Sbjct:  155 VDPLMIRTKLVIDGTGHDAVVCNTILRKIPNAKIGEFGILGEKPMWSEVGERLAVDATQEIYPGLIVAGMAANAATRAPRMGPVFGGMLLSGEKAAKLALDRL 257          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 41/127 (32.28%), Postives = 67/127 (52.76%), Query Frame = -3
Query:  508 SCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 819
            +C+DP  +EA VVV + GHD          G   A G++ ++  + GM +           + PG  ++ +  +ED +V  T +V  G++  G+  A + G  RMGPTFGAM++SG+ AA+  +  L
Sbjct:  164 TCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
BLAST of CB290482 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 41/127 (32.28%), Postives = 67/127 (52.76%), Query Frame = -3
Query:  508 SCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 819
            +C+DP  +EA VVV + GHD          G   A G++ ++  + GM +           + PG  ++ +  +ED +V  T +V  G++  G+  A + G  RMGPTFGAM++SG+ AA+  +  L
Sbjct:  164 TCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
The following BLAST results are available for this feature:
BLAST of CB290482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
THI4_META31.769e-1134.31Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METBF2.311e-1136.54Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_THEMA3.018e-1139.05Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_METMA3.941e-1137.86Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_HALSA6.723e-1132.28Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS36.723e-1132.28Putative thiazole biosynthetic enzyme OS=Halobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290482 ID=CB290482; Name=CB290482; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTAGCACAAAAACAGAGTAAGCTCAGATCTTCATCA
TTGATCTTAATCACATCAGCACTGTCCCATTGGCTGATGCCTCAAGTTAT
AAACATACAAAGCAAAGAAAAGGGAACAGCCCAAGGGCAGTCTTACACAT
AATACAGATAACAAGGACTAGATACGCAACTGCAAATTCACCCCCGAAAA
ACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTG
CATGATGGACCGGAAACAAACACTTTATTCACAAAACCTCACAACATCAT
CTCATTATTCGCATCAACCATCCATCACAACCACCTAAATACAACTACTT
TTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGATGATGCCTG
TTATTATCAAATTAACCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAA
GATCAGCTCAGGGTGAACACCTCCCACATATGTACCGTCTAATGCATTCG
GCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATC
ATCATTGCTCCAAATGTTGGCCCCATTCTAGGAGCACCATCAATCTCGGC
AACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCCTGGTCAGCC
TCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGC
ACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTCCAGTGGCCCC
AAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTCGCTTCCATTA
CATTGGGATCCATGCAAGACTGTGTATCGTGATTCATTGACACCA
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