CB290493

Overview
NameCB290493
Unique NameCB290493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.961e-35
Identity = 67/100 (67.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:  307 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTG-FVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            A+K+ P PFL KTY L++DPATD+++SW  D    FVVW+P EFARD+LP  FKH+NFSSFVRQLNTYGFRKV   RWEF N+ FRKGEK LL +I RRK
Sbjct:   17 AQKAVPAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRK 116          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.739e-34
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1
Query:  316 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKA 606
            + P PFL KTY L++DP+TD+V+SW  D   FVVW+P EFARDLLP  FKH+NFSSFVRQLNTYGFRK+   RWEF N+ FRKG K LL +I RRK+
Sbjct:   32 AAPAPFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKS 128          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.501e-33
Identity = 72/158 (45.57%), Postives = 94/158 (59.49%), Query Frame = 1
Query:  316 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRK 789
            S PPPFL KTY ++EDPATD ++SW+     F+VW P EF+RDLLP  FKH+NFSSFVRQLNTYGFRKV   RWEF N+ F +G+K LL KI RRK+                S  +                L +E ++LK++   L  ELV ++++
Sbjct:   48 SLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQ 205          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.731e-33
Identity = 76/185 (41.08%), Postives = 104/185 (56.22%), Query Frame = 1
Query:  307 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK------------AWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNT-----------LRDENKRLKKENGNLSSELVSMKRKC 792
            +++S P PFL KT+ L+ED + D+VISWN DG+ F+VW P +FA+DLLP  FKH+NFSSFVRQLNTYGF+KV   RWEF N  F++GEK LL +I+RRK            +               E ++ +Q           + T           L +EN++L+ +N  L+ EL  MK  C
Sbjct:   16 SQRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTHQTVVAPSSEQRNQTMVVSPSNSGEDNNNNQVMSSSPSSWYCHQTKTTGNGGLSVELLEENEKLRSQNIQLNRELTQMKSIC 200          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.831e-32
Identity = 70/160 (43.75%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  316 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNT--LRDENKRLKKENGNLSSELVSMKRK 789
            + PPPFL+KTY +++DP+TD ++SW+     FVVW P EFA+DLLP  FKH+NFSSFVRQLNTYGFRKV   RWEF N+ F +G+K LL  I RRK                +   +            E     L +E +RLK++   L  ELV ++++
Sbjct:   37 NAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQ 196          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.831e-32
Identity = 70/160 (43.75%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  316 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNT--LRDENKRLKKENGNLSSELVSMKRK 789
            + PPPFL+KTY +++DP+TD ++SW+     FVVW P EFA+DLLP  FKH+NFSSFVRQLNTYGFRKV   RWEF N+ F +G+K LL  I RRK                +   +            E     L +E +RLK++   L  ELV ++++
Sbjct:   35 NAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQ 194          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.308e-32
Identity = 70/158 (44.30%), Postives = 93/158 (58.86%), Query Frame = 1
Query:  316 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRK 789
            + PPPFL KTY +++D  TD+++SW+ +   F+VW+P EFARDLLP  FKH+NFSSFVRQLNTYGFRKV   RWEF N+ F +G+K LL  I RRK                  H   Q              L +E +RLK++   L  ELV ++++
Sbjct:   33 NAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRK-----PAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQ 185          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.238e-32
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 1
Query:  322 PPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKA 606
            P PFL KT  ++E+ ATD VISW  +G  FVVW+P EFARDLLP  FKH NFSSFVRQLNTYGFRKV   RWEF N  FR+GE+ LL  IRRRKA
Sbjct:   28 PAPFLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRKA 122          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.076e-31
Identity = 63/96 (65.62%), Postives = 72/96 (75.00%), Query Frame = 1
Query:  316 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            + PPPFL+KTY +++DPATD V+SW      FVVW   EFARDLLP  FKHSNFSSFVRQLNTYGFRKV   RWEF N+ F +G+K LL  I RRK
Sbjct:   33 TAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRK 128          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.835e-31
Identity = 73/156 (46.79%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  322 PPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRK 789
            PPPFL KTY L+EDPATD V+SW+  G  FVVW P  FA  LLP LFKH+NFSSFVRQLNTYGFRKV   RWEF N+ F +G++ LL  I+RRK  +N             +    Q+         E+    +E  RLK++   L +E+V ++++
Sbjct:   40 PPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRKPPSN-------------APPSQQQSLTSCLEVGEFG-FEEEIDRLKRDKNILITEVVKLRQE 181          
The following BLAST results are available for this feature:
BLAST of CB290493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HFB4C_ORYSJ7.961e-3567.00Heat stress transcription factor B-4c OS=Oryza sat... [more]
HFB4D_ORYSJ6.739e-3465.98Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFA1A_ARATH1.501e-3345.57Heat stress transcription factor A-1a OS=Arabidops... [more]
HFB2A_ARATH9.731e-3341.08Heat stress transcription factor B-2a OS=Arabidops... [more]
HSF8_SOLPE2.831e-3243.75Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSF8_SOLLC2.831e-3243.75Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HFA1D_ARATH6.308e-3244.30Heat stress transcription factor A-1d OS=Arabidops... [more]
HSFB1_ORYSJ8.238e-3268.42Heat stress transcription factor B-1 OS=Oryza sati... [more]
HSFA1_ORYSJ1.076e-3165.63Heat stress transcription factor A-1 OS=Oryza sati... [more]
HFA2C_ORYSJ1.835e-3146.79Heat stress transcription factor A-2c OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290493 ID=CB290493; Name=CB290493; organism=Citrus sinensis; type=EST; length=796bp
GCACGTGGGAAGTCTTTAGCAATTAAATAGCATTGCAATTGAATTCTCAT
GAATTGCCCTCGTGGAGTCGTATTGGGTTTCTATTGTTGGGGCTGGGAGT
TCTTAACTGCAATTCTCATCTTCTCCAATATCCTTCTTCATCTTTAGATT
AATCTTCTTCTCTTTTAGCTAATTTCCCTCTTCAATATTTCCCTTCTTTT
TTTTTTTTTGGTCTTTTTAATTGTTTGCGATATTTGAAATATGGAGGCTA
CAAATAATATTACAATAAGCAGCTGCTGTGATGACAATAAGGGCCTACTG
GAATATGCCAGAAAATCAACACCCCCACCATTTCTGTTGAAGACTTACAT
GCTAATAGAGGATCCGGCCACCGATAACGTCATCTCGTGGAACGGCGACG
GCACCGGCTTCGTTGTCTGGCAGCCGGCCGAGTTTGCCCGGGATCTACTG
CCGACACTCTTCAAGCACAGCAACTTCTCTAGCTTTGTTCGCCAGCTCAA
TACTTACGGATTTCGAAAAGTAGCAACAAGCAGGTGGGAATTTTGCAACC
AAATGTTTAGAAAGGGGGAGAAAGATCTTTTATGCAAGATACGTCGAAGA
AAAGCATGGGCAAACAGGCAGCAAGCAGCAACGGCAGCAGCAACACAACA
AGAATCTCATGATGAAGATCAAAGGTCGTCGTCGTCGACGTCATCGTTGT
CGGAGTACAACACCCTAAGGGATGAGAATAAGCGTTTGAAGAAGGAGAAT
GGGAACTTAAGTTCGGAGCTTGTAAGCATGAAAAGGAAGTGCAAGG
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