CB290499

Overview
NameCB290499
Unique NameCB290499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.149e-37
Identity = 93/261 (35.63%), Postives = 144/261 (55.17%), Query Frame = 2
Query:   23 SIMTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGT-----IMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF----VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG 775
            S++  +  I N+ ++E LA + L K  + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D++T +LG ++ +P  ++ TA  K+ +P EGE           T     I TL+S +   + E + +   I+++QLYV   R +   LVK  E+ G KA+ +TVD P LG+RE D+K +F      P  +   N E          +  G +  ++  ID SL WKD++ L+  T LPI++KGV   ED   A + G
Sbjct:  194 SLLPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIG 444          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.376e-36
Identity = 89/238 (37.39%), Postives = 139/238 (58.40%), Query Frame = 2
Query:   62 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQY 772
            +++A A+++L K  +D+    A+D  T  +N  AF RI  RPR LRDVSKID  TT+ G  I+ PI I+PTAF  +A  +GE               +SS+A+ +VE++ +  P G+ +FQLYV    +++ Q+V+R E  GFKA+ +TVD P LG R  + ++   L  ++ LK+       +      SGL + ++     S  W D+  LQ++T LPI++KG+LT EDA LA+++
Sbjct:    8 DFKAQAQKQLSKTSWDFIEGEADDGITYNDNLAAFRRIRLRPRYLRDVSKIDTRTTIQGQEINAPICISPTAFHSIAWADGEKSTAKAAQKANICYVISSYASYTVEDIVAAAPGGLHWFQLYVQPDWDINKQMVQRIEALGFKALVVTVDAPVLGNRRGNKRSLLDLEANIKLKDL------RSPGESKSGLPTPLSMPSSSSC-WNDLPLLQSMTRLPIILKGILTKEDAELAVKH 238          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.477e-33
Identity = 86/261 (32.95%), Postives = 134/261 (51.34%), Query Frame = 2
Query:   53 NVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK----------------NYEGLYIGKMDKTDDSGL---ASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            NV +Y  L +++LPKMVYDY   GAED++ ++ NR+ F +  F+P+ L DVS+  +   VLG   SMP++I PT       P+G+          G    LS+ +  S+E+++    G  +FQLYV  HR +   +V +A   G+  + LT D    G RE D+ NRF +P   + K                 +    +     +  S L   A+ ++ Q+D S NW+ ++WL+ +    +LVKG+L+AEDA   I  GA
Sbjct:    7 NVEDYRKLRQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPMSYSAKVVLDGCLHPRWSLDFVRHGMPQLANFVSSQTSSLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGA 266          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LLDD2_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 2 OS=Mycobacterium tuberculosis GN=lldD2 PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.668e-30
Identity = 80/257 (31.13%), Postives = 127/257 (49.42%), Query Frame = 2
Query:   56 VMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY----------------EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG 775
            + +   +AK + P+  +DY   GAED+ ++   R  F  I F P ILRDV+ +     VLG    +P  IAPT F ++ H EGE          G   +LS+ AT ++E++    P G ++FQLY+ + R+    LV+R   AGF  + +TVD P  G R  D++N   +PP LTL+                  E L    +D+   + +  Y+    D SL + D+ W+++     ++VKG+ T +DA   +  G
Sbjct:   37 IQDLRRIAKRRTPRAAFDYADGGAEDELSIARARQGFRDIEFHPTILRDVTTVCAGWNVLGQPTVLPFGIAPTGFTRLMHTEGEIAGARAAAAAGIPFSLSTLATCAIEDLVIAVPQGRKWFQLYMWRDRDRSMALVRRVAAAGFDTMLVTVDVPVAGARLRDVRNGMSIPPALTLRTVLDAMGHPRWWFDLLTTEPLAFASLDRWPGT-VGEYLNTVFDPSLTFDDLAWIKSQWPGKLVVKGIQTLDDARAVVDRG 292          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LLDD_PSEFS (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas fluorescens (strain SBW25) GN=lldD PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 9.668e-30
Identity = 78/265 (29.43%), Postives = 128/265 (48.30%), Query Frame = 2
Query:   47 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDDSGLAS--------------YVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            I++  +Y A A+ KLP+ ++DY   GA  + T++ N +  + I  R RILR+V  + + TTV G  + MP++++P     M    GE          G    LS+ +   +EEV+S      +FQLYV K R      ++RA+ AG   +  TVD P  G R  D  +    P     +  + +        +G M +  D G  S              ++AN  D S++WKD++W++     P+++KG+L  +DA  A+ +GA
Sbjct:    3 ISSASDYRAAAQRKLPRFLFDYIDGGAYAEHTMRANSSDLAEISLRQRILRNVDNLSLKTTVFGQELDMPVILSPVGLTGMYARRGEVQAAKAAANKGVPFCLSTVSVCPIEEVASQSARAIWFQLYVLKDRGFMRNALERAQAAGVTTLVFTVDMPTPGARYRDAHSGMSGPFAAQRRMLQAMTKPQWAFDVGLMGRPHDLGNISKYLGKPTHLEDYIGWLANNFDPSISWKDLEWIREFWKGPMIIKGILDPQDAKDAVSFGA 267          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 78/265 (29.43%), Postives = 130/265 (49.06%), Query Frame = 2
Query:   47 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD----IKNRFVLPPHL---TLKNYEGLYIGKMDKTDDSGLAS--------------YVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            I++  +Y A AK KLP+ ++DY   GA  + TL+ N +  + I  R R+L++V  + + T + G +++MPI+++P     M    GE               LS+ +  S+EEV+S      +FQLYV K R      ++RA+ AG   +  TVD P  G R  D    +   +  P  +     K    L +G + +  D G  S              ++AN  D S++WKD++W++     P+++KG+L  +DA  A+ +GA
Sbjct:    3 ISSASDYRAAAKRKLPRFLFDYIDGGAYAEHTLRANGSDLADISLRQRVLKNVDNVSLETRLFGESLAMPIILSPVGLSGMYARRGEVQVARAAANKRIPFCLSTVSVCSIEEVASQSDQAIWFQLYVLKDRGFMKNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPYAAPRRILQAMTKPDWALNVGLLGRPHDLGNISRYLGKATTLEDYVGWLANNFDPSISWKDLEWIREFWQGPMIIKGILDPQDARDALSFGA 267          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LLDD_VIBPA (L-lactate dehydrogenase [cytochrome] OS=Vibrio parahaemolyticus GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.182e-27
Identity = 75/260 (28.85%), Postives = 125/260 (48.08%), Query Frame = 2
Query:   62 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYE-------GLYIGKMDKTDDSGLAS--------------YVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            +Y A AK KLP  ++ Y   G+ D+ TL+ N +    +  R R+LRD++ + + T + G  ++MPI +AP     M    GE          G   T+S+ +   +EEV+       +FQLYV K R     +++RA+ AG   +  TVD P  G R  D+ +    P     + ++        L +G + K  D G  S              ++    D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    8 DYRAAAKAKLPPFLFHYIDGGSYDERTLKRNTDDLGDVALRQRVLRDMTDLSLETEIFGEKLAMPIALAPVGLTGMYARRGEVQAAKAAEKKGIPFTMSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMKNVLERAKAAGVTTLVFTVDMPVPGARYRDMHSGMSGPNAAMRRVFQAMRHPSWALDVGLLGKPHDLGNISTYRGEPTKLEDYIGWLGANFDPSISWKDLEWIRDFWDGPMVIKGILDEEDAKDAVRFGA 267          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LLDD_SALTY (L-lactate dehydrogenase [cytochrome] OS=Salmonella typhimurium GN=lldD PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.543e-27
Identity = 78/268 (29.10%), Postives = 130/268 (48.51%), Query Frame = 2
Query:   47 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV + R      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGA 267          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LLDD_SALTI (L-lactate dehydrogenase [cytochrome] OS=Salmonella typhi GN=lldD PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.543e-27
Identity = 78/268 (29.10%), Postives = 130/268 (48.51%), Query Frame = 2
Query:   47 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV + R      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISATSDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTLKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGA 267          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LLDD_SALSV (L-lactate dehydrogenase [cytochrome] OS=Salmonella schwarzengrund (strain CVM19633) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.543e-27
Identity = 78/268 (29.10%), Postives = 130/268 (48.51%), Query Frame = 2
Query:   47 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV + R      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTLKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGA 267          
The following BLAST results are available for this feature:
BLAST of CB290499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
CYB2_YEAST2.149e-3735.63Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
HAOX2_MOUSE2.376e-3637.39Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]
MDLB_PSEPU5.477e-3332.95(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]
LLDD2_MYCTU5.668e-3031.13Putative L-lactate dehydrogenase [cytochrome] 2 OS... [more]
LLDD_PSEFS9.668e-3029.43L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEU21.396e-2829.43L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_VIBPA1.182e-2728.85L-lactate dehydrogenase [cytochrome] OS=Vibrio par... [more]
LLDD_SALTY1.543e-2729.10L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALTI1.543e-2729.10L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALSV1.543e-2729.10L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290499 ID=CB290499; Name=CB290499; organism=Citrus sinensis; type=EST; length=780bp
GCCCGAGGGGAAGCCAAGCGATAGCATTATGACTTATATATCCGAGATCA
CCAATGTTATGGAGTATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGATG
GTTTATGACTACTATGCATCAGGTGCTGAGGACCAGTGGACTCTTCAGGA
AAACCGTAATGCATTCTCTAGGATTCTATTTCGACCACGCATTCTTAGAG
ATGTAAGCAAGATTGACATGACTACAACAGTCTTGGGCTTCAACATTTCC
ATGCCCATCATGATTGCTCCAACGGCATTTCAGAAAATGGCTCATCCTGA
AGGGGAGTGTGCAACAGCAAGGGCAGCCTCAGCAGCTGGCACAATCATGA
CATTATCTTCATGGGCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGA
CCTGGAATTCGCTTTTTCCAACTCTATGTGACCAAGCACAGGAATGTGGA
CGCACAGCTAGTAAAAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCC
TTACCGTCGATACTCCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGAAC
AGATTTGTTTTGCCGCCACATCTGACTTTGAAGAACTATGAGGGCTTGTA
TATTGGCAAGATGGATAAGACTGATGACTCTGGATTAGCTTCGTATGTTG
CCAACCAAATTGACCGGTCACTGAACTGGAAGGATGTGAAGTGGCTTCAA
ACAATCACCTCACTGCCAATACTCGTGAAGGGTGTTCTTACTGCTGAAGA
TGCAAGTCTAGCAATACAATATGGAGCTGC
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