CB290513

Overview
NameCB290513
Unique NameCB290513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB_DICDI (Nuclear transcription factor Y subunit beta OS=Dictyostelium discoideum GN=nfyB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.620e-38
Identity = 83/129 (64.34%), Postives = 103/129 (79.84%), Query Frame = 1
Query:  241 GGS--HESGGEQSPHAG-GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREME--GDTKGSARGGDGSA 612
            GGS  + SGG  + +   G REQDRYLPIANI RIMKKALP N K+AKDAK+TVQ+CVSEFISFITSEASDKCQ+EKRKTING+D++ AM +LGFE+Y++PLK YL++YRE E   + K S +  + S+
Sbjct:   27 GGSSNNNSGGNANNNNNEGDREQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTINGEDIIAAMVSLGFENYVEPLKVYLLKYRETEKNSNNKRSPKKSESSS 155          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB_PETMA (Nuclear transcription factor Y subunit beta OS=Petromyzon marinus GN=NFYB PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 85/158 (53.80%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  208 SEMAEAPTSPAGGSH-ESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPL 675
            S   +A  S A G H ES G + P+    REQD YLPIAN++RIMK ++P++GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL +YRE M+G+       G  +    T  A+P +  + +  GPL
Sbjct:   29 SSDGDAEGSLASGDHDESCGSKDPY----REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEK------GINATVVTTTDAIPEELTEESFSGPL 176          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.523e-36
Identity = 76/136 (55.88%), Postives = 95/136 (69.85%), Query Frame = 1
Query:  229 TSPAGGSHESGG-------EQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKG-SARGGDGSA 612
            +S +   HE  G       +Q   +  V+EQDR LPIAN+ RIMK  LPAN K++K+AK+T+QECVSEFISF+T EASDKC KEKRKT+NGDD+ WAMA LGF+DY   LK YL RYR +EG+      +GG  S+
Sbjct:   22 SSSSNHQHEHDGLVVVVEDQQQEESMMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSS 157          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.676e-35
Identity = 73/141 (51.77%), Postives = 101/141 (71.63%), Query Frame = 1
Query:  256 SGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALP-GQNAQYALQGPL 675
            +GGE+      VREQDR++PIAN+ RIM++ LPA+ KI+ D+K+T+QECVSE+ISFIT EA+++CQ+E+RKTI  +D+LWAM+ LGF+DYI+PL  YL RYRE+EG+   S   G  S     +   P G   +Y   GP+
Sbjct:   48 NGGEEECT---VREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCSAGSVSMTNGLVVKRPNGTMTEYGAYGPV 185          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB_CHICK (Nuclear transcription factor Y subunit beta OS=Gallus gallus GN=NFYB PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.189e-35
Identity = 75/121 (61.98%), Postives = 96/121 (79.34%), Query Frame = 1
Query:  292 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKGSARGGDGSAKRDTIGALPGQ 645
            REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+    G+   GDG ++  T  A   Q
Sbjct:   51 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGTVTTGDGLSEELTEEAFTNQ 171          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB_RAT (Nuclear transcription factor Y subunit beta OS=Rattus norvegicus GN=Nfyb PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35
Identity = 82/166 (49.40%), Postives = 111/166 (66.87%), Query Frame = 1
Query:  163 SKLARQIQKLWGFYWSEMAEAPTSPAGGSHE--SGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKGSARGGDGSAKRDTIGALPGQ 645
            S+L      + G ++       T  +   HE  +G ++S      REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+    G+    DG ++  T  A   Q
Sbjct:   13 SQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKES-----FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVSATDGLSEELTEEAFTNQ 173          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB_MOUSE (Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35
Identity = 82/166 (49.40%), Postives = 111/166 (66.87%), Query Frame = 1
Query:  163 SKLARQIQKLWGFYWSEMAEAPTSPAGGSHE--SGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKGSARGGDGSAKRDTIGALPGQ 645
            S+L      + G ++       T  +   HE  +G ++S      REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+    G+    DG ++  T  A   Q
Sbjct:   13 SQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKES-----FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVSATDGLSEELTEEAFTNQ 173          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB_HUMAN (Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35
Identity = 82/166 (49.40%), Postives = 111/166 (66.87%), Query Frame = 1
Query:  163 SKLARQIQKLWGFYWSEMAEAPTSPAGGSHE--SGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKGSARGGDGSAKRDTIGALPGQ 645
            S+L      + G ++       T  +   HE  +G ++S      REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+    G+    DG ++  T  A   Q
Sbjct:   13 SQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKES-----FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEAFTNQ 173          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB_BOVIN (Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35
Identity = 82/166 (49.40%), Postives = 111/166 (66.87%), Query Frame = 1
Query:  163 SKLARQIQKLWGFYWSEMAEAPTSPAGGSHE--SGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKGSARGGDGSAKRDTIGALPGQ 645
            S+L      + G ++       T  +   HE  +G ++S      REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+    G+    DG ++  T  A   Q
Sbjct:   13 SQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKES-----FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLSEELTDEAFTNQ 173          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB_HORSE (Nuclear transcription factor Y subunit beta OS=Equus caballus GN=NFYB PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.419e-34
Identity = 76/143 (53.15%), Postives = 100/143 (69.93%), Query Frame = 1
Query:  163 SKLARQIQKLWGFYWSEMAEAPTSPAGGSHE--SGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKG 585
            S+L      + G ++       T  +   HE  +G ++S      REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE     KG
Sbjct:   13 SQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKES-----FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150          
The following BLAST results are available for this feature:
BLAST of CB290513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYB_DICDI1.620e-3864.34Nuclear transcription factor Y subunit beta OS=Dic... [more]
NFYB_PETMA6.154e-3853.80Nuclear transcription factor Y subunit beta OS=Pet... [more]
NFYB5_ARATH7.523e-3655.88Nuclear transcription factor Y subunit B-5 OS=Arab... [more]
NFYB6_ARATH1.676e-3551.77Nuclear transcription factor Y subunit B-6 OS=Arab... [more]
NFYB_CHICK2.189e-3561.98Nuclear transcription factor Y subunit beta OS=Gal... [more]
NFYB_RAT8.318e-3549.40Nuclear transcription factor Y subunit beta OS=Rat... [more]
NFYB_MOUSE8.318e-3549.40Nuclear transcription factor Y subunit beta OS=Mus... [more]
NFYB_HUMAN8.318e-3549.40Nuclear transcription factor Y subunit beta OS=Hom... [more]
NFYB_BOVIN8.318e-3549.40Nuclear transcription factor Y subunit beta OS=Bos... [more]
NFYB_HORSE1.419e-3453.15Nuclear transcription factor Y subunit beta OS=Equ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290513 ID=CB290513; Name=CB290513; organism=Citrus sinensis; type=EST; length=697bp
GATCATCCTCCCATCTCTCCCTCCCTCTCTTCTCCATCGTCAGATTTTCT
TTCTCCTTAAAAACCAAAAACCAAAATCAAATCAAATTAAACCAAAAAAA
AAACTATTAAAAATAAACAGATCATAATTCATAACCAATCGCCACCTCCC
TCTCCCCCCTTCTCCAAACTCGCGCGCCAAATACAAAAACTCTGGGGATT
TTATTGGTCGGAGATGGCGGAAGCACCGACGAGTCCGGCGGGAGGTAGCC
ACGAGAGCGGGGGAGAGCAGAGCCCGCACGCTGGGGGAGTGAGAGAGCAG
GACAGGTATTTGCCAATAGCTAACATTAGCAGGATCATGAAGAAGGCTTT
GCCTGCTAATGGCAAGATCGCTAAGGATGCTAAGGATACTGTACAGGAAT
GTGTCTCTGAGTTCATCAGCTTCATTACCAGCGAGGCGAGTGATAAGTGT
CAGAAGGAGAAGAGGAAGACAATTAATGGGGATGATTTGCTCTGGGCAAT
GGCAACTCTGGGTTTTGAAGATTATATTGATCCTCTTAAGGCATACCTTA
TGAGGTACAGGGAGATGGAGGGTGACACCAAAGGATCTGCTAGGGGTGGG
GATGGATCTGCTAAAAGGGACACGATTGGAGCTCTGCCTGGCCAAAATGC
ACAGTATGCTCTTCAGGGTCCACTCAACTATGTTAATCCCCAGGCAC
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