CB290513

Overview
NameCB290513
Unique NameCB290513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.420e-34
Identity = 65/113 (57.52%), Postives = 93/113 (82.30%), Query Frame = 1
Query:  292 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIG 630
            REQD+Y+PIAN+ RIM+K LP++ KI+ DAK+T+QECVSE+ISF+T EA+++CQ+E+RKTI  +D+LWAM+ LGF++Y+DPL  ++ RYRE+E D +GSA  G+  + R T G
Sbjct:   28 REQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETD-RGSALRGEPPSLRQTYG 139          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB4_ARATH (Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana GN=NFYB4 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 56/105 (53.33%), Postives = 80/105 (76.19%), Query Frame = 1
Query:  295 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGS 609
            ++DR LPIAN+ R+MK+ LP+N KI+K+AK TVQEC +EFISF+T EAS+KC +E RKT+NGDD+ WA++TLG ++Y D +  +L +YRE E +     +G + S
Sbjct:    3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVNGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTEHNKGSNDS 107          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: HAP3_YEAST (Transcriptional activator HAP3 OS=Saccharomyces cerevisiae GN=HAP3 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 63/126 (50.00%), Postives = 88/126 (69.84%), Query Frame = 1
Query:  208 SEMAEAPTSPAGGSHESGGEQSPHAG-----GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREME 570
            +E     TSP   + E+GG  S          +REQDR+LPI N++R+MK  LP + K++KDAK+ +QECVSE ISF+TSEASD+C  +KRKTING+D+L ++  LGFE+Y + LK YL +YR+ +
Sbjct:    4 NESEHVSTSPED-TQENGGNASSSGSLQQISTLREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQQQ 128          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: HAP3_KLULA (Transcriptional activator HAP3 OS=Kluyveromyces lactis GN=HAP3 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 55/92 (59.78%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  295 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREME 570
            EQDR+LPI N++R+MK  LPA  K++KDAK+ +QECVSEFISF+TSEA D+C   KRKTING+D+L ++  LGFE+Y + LK YL +YR+ +
Sbjct:   22 EQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRKTINGEDILLSLHALGFENYAEVLKIYLAKYRQQQ 113          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: HAP3_SCHPO (Transcriptional activator hap3 OS=Schizosaccharomyces pombe GN=hap3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 1
Query:  310 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREME 570
            LPIAN++RIMK ALP N KI+K+AKD VQ+CVSEFISF+T EAS++C +EKRKTI G+D+L A+ TLGFE+Y + LK  L +YRE +
Sbjct:   12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDVLLALNTLGFENYAEVLKISLTKYREQQ 98          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB_XENLA (Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus laevis GN=nfyb PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query:  391 VQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKGSARGGDG 606
            VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+    G+   GDG
Sbjct:    1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGTVTTGDG 75          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB1_ORYSJ (Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp. japonica GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  310 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREME 570
            LP+AN+ R++KK LP   KI   AK    +C  EF+ F+  EAS+K + E R+T+  +D L +   LGF+ Y+DP+ AY+  YRE E
Sbjct:   34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFE 120          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NC2B_ARATH (Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 45/141 (31.91%), Postives = 80/141 (56.74%), Query Frame = 1
Query:  286 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPL-KAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQ----NAQYALQGPLNYVNPQ 693
            G  ++D  LP A +++I+K+ LP + ++A+DA+D + EC  EFI+ ++SE++D C KE ++TI  + +L A+  LGF +YI+ +  AY     E   DT+ S +   G+   +   A   Q     A+  + G ++   P+
Sbjct:    8 GKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTEEEAAAEQQRMFAEARARMNGGVSVPQPE 148          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: DPOE3_RAT (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  292 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY-REMEGDTKGSARGGDGSAKRD 621
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   K KRKT+N  D+L AM  + F+ ++ PLK  L  Y RE +G  + S +      K+D
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKD 114          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: DPOE3_MOUSE (DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  292 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAK 615
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   K KRKT+N  D+L AM  + F+ +I PLK  L  YR    D KG     +   K
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFITPLKEALEAYRR---DEKGKKEASEQKKK 108          
The following BLAST results are available for this feature:
BLAST of CB290513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYB9_ARATH2.420e-3457.52Nuclear transcription factor Y subunit B-9 OS=Arab... [more]
NFYB4_ARATH6.820e-2953.33Nuclear transcription factor Y subunit B-4 OS=Arab... [more]
HAP3_YEAST8.908e-2950.00Transcriptional activator HAP3 OS=Saccharomyces ce... [more]
HAP3_KLULA2.194e-2759.78Transcriptional activator HAP3 OS=Kluyveromyces la... [more]
HAP3_SCHPO1.857e-2664.37Transcriptional activator hap3 OS=Schizosaccharomy... [more]
NFYB_XENLA1.989e-2064.00Nuclear transcription factor Y subunit beta (Fragm... [more]
NFYB1_ORYSJ5.070e-1643.68Nuclear transcription factor Y subunit B-1 OS=Oryz... [more]
NC2B_ARATH6.197e-1431.91Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1... [more]
DPOE3_RAT1.169e-1237.84DNA polymerase epsilon subunit 3 OS=Rattus norvegi... [more]
DPOE3_MOUSE1.994e-1238.89DNA polymerase epsilon subunit 3 OS=Mus musculus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bh12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290513 ID=CB290513; Name=CB290513; organism=Citrus sinensis; type=EST; length=697bp
GATCATCCTCCCATCTCTCCCTCCCTCTCTTCTCCATCGTCAGATTTTCT
TTCTCCTTAAAAACCAAAAACCAAAATCAAATCAAATTAAACCAAAAAAA
AAACTATTAAAAATAAACAGATCATAATTCATAACCAATCGCCACCTCCC
TCTCCCCCCTTCTCCAAACTCGCGCGCCAAATACAAAAACTCTGGGGATT
TTATTGGTCGGAGATGGCGGAAGCACCGACGAGTCCGGCGGGAGGTAGCC
ACGAGAGCGGGGGAGAGCAGAGCCCGCACGCTGGGGGAGTGAGAGAGCAG
GACAGGTATTTGCCAATAGCTAACATTAGCAGGATCATGAAGAAGGCTTT
GCCTGCTAATGGCAAGATCGCTAAGGATGCTAAGGATACTGTACAGGAAT
GTGTCTCTGAGTTCATCAGCTTCATTACCAGCGAGGCGAGTGATAAGTGT
CAGAAGGAGAAGAGGAAGACAATTAATGGGGATGATTTGCTCTGGGCAAT
GGCAACTCTGGGTTTTGAAGATTATATTGATCCTCTTAAGGCATACCTTA
TGAGGTACAGGGAGATGGAGGGTGACACCAAAGGATCTGCTAGGGGTGGG
GATGGATCTGCTAAAAGGGACACGATTGGAGCTCTGCCTGGCCAAAATGC
ACAGTATGCTCTTCAGGGTCCACTCAACTATGTTAATCCCCAGGCAC
back to top