CB290513

Overview
NameCB290513
Unique NameCB290513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: DPOE3_PONAB (DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  292 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY-REMEGDTKGS 588
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   K KRKT+N  D+L AM  + F+ ++ PLK  L  Y RE +G  + S
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS 103          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: DPOE3_HUMAN (DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  292 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY-REMEGDTKGS 588
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   K KRKT+N  D+L AM  + F+ ++ PLK  L  Y RE +G  + S
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS 103          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: DPOE3_BOVIN (DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  292 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY-REMEGDTKGS 588
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   K KRKT+N  D+L AM  + F+ ++ PLK  L  Y RE +G  + S
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS 103          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 33/100 (33.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  292 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSA 591
            +E +  LP A +S+++K+ LP + K + + +D + EC  EFI  I+SEA+D C +E+++TI  + ++ A+  LGF DY   +     +++ +E  TK  +
Sbjct:    7 KEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHK-LEVSTKSKS 105          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NC2B_RAT (Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  295 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 549
            + D  +P A I++++K+ LP N ++A DA++ V  C +EFI  I+SEA++ C K ++KTI+ + ++ A+ +LGF  YI  +K  L
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVL 91          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NC2B_MOUSE (Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  295 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 549
            + D  +P A I++++K+ LP N ++A DA++ V  C +EFI  I+SEA++ C K ++KTI+ + ++ A+ +LGF  YI  +K  L
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVL 91          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NC2B_HUMAN (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  295 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 549
            + D  +P A I++++K+ LP N ++A DA++ V  C +EFI  I+SEA++ C K ++KTI+ + ++ A+ +LGF  YI  +K  L
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVL 91          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NC2B_CHICK (Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  295 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 549
            + D  +P A I++++K+ LP N ++A DA++ V  C +EFI  I+SEA++ C K ++KTI+ + ++ A+ +LGF  YI  +K  L
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVL 91          
The following BLAST results are available for this feature:
BLAST of CB290513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DPOE3_PONAB4.441e-1240.00DNA polymerase epsilon subunit 3 OS=Pongo abelii G... [more]
DPOE3_HUMAN4.441e-1240.00DNA polymerase epsilon subunit 3 OS=Homo sapiens G... [more]
DPOE3_BOVIN4.441e-1240.00DNA polymerase epsilon subunit 3 OS=Bos taurus GN=... [more]
NC2B_DICDI4.910e-1133.00Protein Dr1 homolog OS=Dictyostelium discoideum GN... [more]
NC2B_RAT6.413e-1138.82Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1[more]
NC2B_MOUSE6.413e-1138.82Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1[more]
NC2B_HUMAN6.413e-1138.82Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1[more]
NC2B_CHICK6.413e-1138.82Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290513 ID=CB290513; Name=CB290513; organism=Citrus sinensis; type=EST; length=697bp
GATCATCCTCCCATCTCTCCCTCCCTCTCTTCTCCATCGTCAGATTTTCT
TTCTCCTTAAAAACCAAAAACCAAAATCAAATCAAATTAAACCAAAAAAA
AAACTATTAAAAATAAACAGATCATAATTCATAACCAATCGCCACCTCCC
TCTCCCCCCTTCTCCAAACTCGCGCGCCAAATACAAAAACTCTGGGGATT
TTATTGGTCGGAGATGGCGGAAGCACCGACGAGTCCGGCGGGAGGTAGCC
ACGAGAGCGGGGGAGAGCAGAGCCCGCACGCTGGGGGAGTGAGAGAGCAG
GACAGGTATTTGCCAATAGCTAACATTAGCAGGATCATGAAGAAGGCTTT
GCCTGCTAATGGCAAGATCGCTAAGGATGCTAAGGATACTGTACAGGAAT
GTGTCTCTGAGTTCATCAGCTTCATTACCAGCGAGGCGAGTGATAAGTGT
CAGAAGGAGAAGAGGAAGACAATTAATGGGGATGATTTGCTCTGGGCAAT
GGCAACTCTGGGTTTTGAAGATTATATTGATCCTCTTAAGGCATACCTTA
TGAGGTACAGGGAGATGGAGGGTGACACCAAAGGATCTGCTAGGGGTGGG
GATGGATCTGCTAAAAGGGACACGATTGGAGCTCTGCCTGGCCAAAATGC
ACAGTATGCTCTTCAGGGTCCACTCAACTATGTTAATCCCCAGGCAC
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