CB290516
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.973e-26 Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETT---PQPSELGSSEVDL 616 LD +I++FPTF+YSEVK ++G G +ECAVC+ EFED ETLRL+P+C HVFH +C+ WL H+TCP+CR +L +PGE + P+P + S+ L Sbjct: 68 LDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCLQPGERSYLNPEPDLVESTNSHL 165
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4A_ARATH (RING-H2 finger protein ATL4A OS=Arabidopsis thaliana GN=ATL4A PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.407e-22 Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553 LD E I +FP+FVY+E + ++ G G LEC VCLNEF+DDETLRL+P C HVFH +C+D WL +TCP+CR+ + Sbjct: 57 LDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKV 130
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4I_ARATH (Putative RING-H2 finger protein ATL4I OS=Arabidopsis thaliana GN=ATL4I PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.032e-21 Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPS 589 L+ +I++FPTF YS VK L+ K LECA+CL EF+ D LRL+ C HVFH ECID W ESH TCPVCR +L P +P+ Sbjct: 82 LELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPENTKPT 167
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.902e-19 Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 559 +D+ +IDT P F Y + LK+ +C VCL EFE ++ LRL+PKC H FH ECID WL SH+TCP+CRSNL S Sbjct: 100 VDQSLIDTLPVFHYKSIVGLKISP--FDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLS 173
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2D_ARATH (Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.535e-19 Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDA 634 LD++ I++ P F +S +K LK G LEC+VCL++FED E LRL+PKC H FH CID WLE H TCP+CR+ + E S LG+S L N + Sbjct: 99 LDKKAIESLPFFRFSALKGLKQG---LECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIE-----DDLSVLGNSSTSLRILNQS 191
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18 Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 562 +D+ IDT P F Y + LK +CAVCL EFE ++ LRL+PKC H FH +CID WL SH+TCP+CRS+L S+ Sbjct: 108 VDQSFIDTLPVFHYKSIIGLK--NYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSD 182
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5L_ARATH (Putative RING-H2 finger protein ATL5L OS=Arabidopsis thaliana GN=ATL5L PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.685e-18 Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETL-RLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553 L+ +I ++P F +S VK L+ K LECA+CL EFE++ L RL+ C HVFH ECID WLES+ TCPVCR NL Sbjct: 86 LEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNL 160
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2E_ARATH (RING-H2 finger protein ATL2E OS=Arabidopsis thaliana GN=ATL2E PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18 Identity = 50/143 (34.97%), Postives = 73/143 (51.05%), Query Frame = 2 Query: 224 MGFFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTF--------------VYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN-LASEPGETTPQPSELGSSE 607 MGFFS+Y RH +DSS+S + L V+ + P VY K K + +C +CL++FE+ ET+++IP C HVFH +C+D WL S+ TCP+CRSN L S+ +P + S+E Sbjct: 64 MGFFSVYFRHFADSSSSTVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAK--QRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEPPDQDSAE 204
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17 Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 559 LD+ +ID P F+Y E+K K +CAVCL EF +D+ LRL+P C H FH +CID WL S++TCP+CR L S Sbjct: 119 LDQALIDALPVFLYKEIKGTKE---PFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLFS 191
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 3.037e-17 Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 562 +DR VI++ P F + + K G LECAVCL FE E LRL+PKC H FH EC+D WL++H+TCP+CR + E Sbjct: 121 IDRSVIESLPVFRFGALSGHKDG---LECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 194 The following BLAST results are available for this feature:
BLAST of CB290516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290516 ID=CB290516; Name=CB290516; organism=Citrus sinensis; type=EST; length=748bpback to top |