CB290516

Overview
NameCB290516
Unique NameCB290516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.973e-26
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETT---PQPSELGSSEVDL 616
            LD  +I++FPTF+YSEVK  ++G G +ECAVC+ EFED ETLRL+P+C HVFH +C+  WL  H+TCP+CR +L  +PGE +   P+P  + S+   L
Sbjct:   68 LDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCLQPGERSYLNPEPDLVESTNSHL 165          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4A_ARATH (RING-H2 finger protein ATL4A OS=Arabidopsis thaliana GN=ATL4A PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.407e-22
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553
            LD E I +FP+FVY+E + ++ G G LEC VCLNEF+DDETLRL+P C HVFH +C+D WL   +TCP+CR+ +
Sbjct:   57 LDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKV 130          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4I_ARATH (Putative RING-H2 finger protein ATL4I OS=Arabidopsis thaliana GN=ATL4I PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.032e-21
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPS 589
            L+  +I++FPTF YS VK L+  K  LECA+CL EF+ D  LRL+  C HVFH ECID W ESH TCPVCR +L   P     +P+
Sbjct:   82 LELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPENTKPT 167          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.902e-19
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 559
            +D+ +IDT P F Y  +  LK+     +C VCL EFE ++ LRL+PKC H FH ECID WL SH+TCP+CRSNL S
Sbjct:  100 VDQSLIDTLPVFHYKSIVGLKISP--FDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLS 173          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2D_ARATH (Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.535e-19
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDA 634
            LD++ I++ P F +S +K LK G   LEC+VCL++FED E LRL+PKC H FH  CID WLE H TCP+CR+ +  E        S LG+S   L   N +
Sbjct:   99 LDKKAIESLPFFRFSALKGLKQG---LECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIE-----DDLSVLGNSSTSLRILNQS 191          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 562
            +D+  IDT P F Y  +  LK      +CAVCL EFE ++ LRL+PKC H FH +CID WL SH+TCP+CRS+L S+
Sbjct:  108 VDQSFIDTLPVFHYKSIIGLK--NYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSD 182          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5L_ARATH (Putative RING-H2 finger protein ATL5L OS=Arabidopsis thaliana GN=ATL5L PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.685e-18
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETL-RLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553
            L+  +I ++P F +S VK L+  K  LECA+CL EFE++  L RL+  C HVFH ECID WLES+ TCPVCR NL
Sbjct:   86 LEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNL 160          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2E_ARATH (RING-H2 finger protein ATL2E OS=Arabidopsis thaliana GN=ATL2E PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 50/143 (34.97%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  224 MGFFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTF--------------VYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN-LASEPGETTPQPSELGSSE 607
            MGFFS+Y RH +DSS+S +                 L   V+ + P                VY   K  K  +   +C +CL++FE+ ET+++IP C HVFH +C+D WL S+ TCP+CRSN L S+      +P +  S+E
Sbjct:   64 MGFFSVYFRHFADSSSSTVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAK--QRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEPPDQDSAE 204          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 559
            LD+ +ID  P F+Y E+K  K      +CAVCL EF +D+ LRL+P C H FH +CID WL S++TCP+CR  L S
Sbjct:  119 LDQALIDALPVFLYKEIKGTKE---PFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLFS 191          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.037e-17
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 562
            +DR VI++ P F +  +   K G   LECAVCL  FE  E LRL+PKC H FH EC+D WL++H+TCP+CR  +  E
Sbjct:  121 IDRSVIESLPVFRFGALSGHKDG---LECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 194          
The following BLAST results are available for this feature:
BLAST of CB290516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ATL2F_ARATH7.973e-2652.04RING-H2 finger protein ATL2F OS=Arabidopsis thalia... [more]
ATL4A_ARATH1.407e-2258.11RING-H2 finger protein ATL4A OS=Arabidopsis thalia... [more]
ATL4I_ARATH2.032e-2153.49Putative RING-H2 finger protein ATL4I OS=Arabidops... [more]
ATL2C_ARATH1.902e-1955.26Putative RING-H2 finger protein ATL2C OS=Arabidops... [more]
ATL2D_ARATH5.535e-1947.52Putative RING-H2 finger protein ATL2D OS=Arabidops... [more]
ATL4K_ARATH2.747e-1853.25RING-H2 finger protein ATL4K OS=Arabidopsis thalia... [more]
ATL5L_ARATH4.685e-1856.00Putative RING-H2 finger protein ATL5L OS=Arabidops... [more]
ATL2E_ARATH7.992e-1834.97RING-H2 finger protein ATL2E OS=Arabidopsis thalia... [more]
ATL1D_ARATH2.325e-1751.32RING-H2 finger protein ATL1D OS=Arabidopsis thalia... [more]
ATL5C_ARATH3.037e-1750.65RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ca03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290516 ID=CB290516; Name=CB290516; organism=Citrus sinensis; type=EST; length=748bp
GCCCTTGGCAATAATGGGGTCACGACTCTTACCCTACTCCGCCAAACATG
GGACCAATCCCCTTTCTCTCCAGCTCCTCATGCTCCTCGTGGCCCACGCG
CTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGCCCCCGGGCTCCGTCGA
CCCCTACTCCAACATGAAATTCAGCCCCTCACTCGCCATAATAATCGTCG
TGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTCTCCATCTACATTCGC
CACTGCTCCGACTCCAGCAACTCCGTCATCCGCCCCGCCGGCGCCGGAGG
CAACCGCTCCAGGCGCGGCGCCGCCCGCGGCCTCGACCGCGAGGTCATCG
ACACTTTCCCGACCTTCGTGTACTCGGAGGTCAAGACGCTGAAGGTCGGC
AAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGAGTTCGAGGATGACGA
AACGCTGCGTTTGATCCCGAAATGCGACCACGTCTTCCACCCCGAGTGCA
TCGACGCCTGGCTTGAATCGCACACCACGTGTCCTGTTTGCCGCTCGAAT
TTGGCCTCTGAACCCGGTGAGACAACTCCTCAACCCAGTGAGCTGGGCTC
ATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCGCGGTAGCAGCAGAGA
CTCCACAAGAAACACAACCACAGCCACAAGGCTCACAACCACCGGAACCT
CAAGTTATCAGCGTCAACTTTGCTAATCAAACGCTTAATAGGAACCGT
back to top