CB290516

Overview
NameCB290516
Unique NameCB290516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2H_ARATH (RING-H2 finger protein ATL2H OS=Arabidopsis thaliana GN=ATL2H PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.176e-15
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG 568
            LD  +I +FP F YS       G    ECA+CL+EF D++T+RLI  C H FH  CID W E H TCPVCR  L  +PG
Sbjct:   78 LDPFIIRSFPVFHYSSATKKNHGT---ECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCEL--DPG 151          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.842e-15
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVD 613
            L+  +I + P F +S V  L     A+EC+VCL+EF+D+E+ R++P C H FH  CID W  SH++CP+CRS +    G       E+  S  D
Sbjct:   52 LNPSIIKSLPIFTFSAVTALF----AMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQIEPFAGGVKSSMDEVAISISD 141          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL3J_ARATH (RING-H2 finger protein ATL3J OS=Arabidopsis thaliana GN=ATL3J PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.842e-15
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  344 VIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 604
            V+D+ P F +S V        + +CAVCL++FE ++ LRL+P C H FH +CID WL S+ TCP+CRS L +   +     + +GS+
Sbjct:   93 VLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSN 179          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1A_ARATH (RING-H2 finger protein ATL1A OS=Arabidopsis thaliana GN=ATL1A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.842e-15
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLK----VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 574
            LD   I   P F + +   +       K + EC+VCLNEF++DE LR+IP C HVFH +CID WL+ +  CP+CR++++ E   T
Sbjct:  102 LDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFT 186          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5K_ARATH (RING-H2 finger protein ATL5K OS=Arabidopsis thaliana GN=ATL5K PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.712e-15
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  332 LDREVIDTFPTFV----YSEVKTLKVGKG-------ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA---SEPGETTPQPSELGSSEVDLEAQNDAAV 640
            LD  VI   P F     Y +   +  G+G       + EC+VCL+EF+D+E LR+IP C H+FH +CID WL+++  CP+CR+ ++   S P +    PS    + V L  +N+  V
Sbjct:   99 LDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPENLVMLRGENEYVV 215          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL3G_ARATH (RING-H2 finger protein ATL3G OS=Arabidopsis thaliana GN=ATL3G PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.848e-15
Identity = 41/90 (45.56%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTL---KVGKGAL----ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 580
            LD  VI T P F+YS         VGK +     +CAVCL EFE+ + +R +P C H FH ECID WL SH  CP+CR+ +    G  TP
Sbjct:  121 LDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGSAGVLTP 210          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL3E_ARATH (Putative RING-H2 finger protein ATL3E OS=Arabidopsis thaliana GN=ATL3E PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  401 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQND 631
            K  LEC VCL+E  D +  R++P CDH FH ECID+WL+S++TCP+CR  +  +   T P   ELG  +      +D
Sbjct:   83 KYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCLKQSRTRP---ELGGRDKSFNQNHD 156          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5N_ARATH (Putative RING-H2 finger protein ATL5N OS=Arabidopsis thaliana GN=ATL5N PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.842e-14
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553
            +D+  ID  P   Y  +  L+      +CAVCL EF  ++ LRL+PKC H FH ECID WL +++TCP+CR NL
Sbjct:   96 IDQSFIDALPLLHYKTMIGLR--HDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCRDNL 167          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4E_ARATH (RING-H2 finger protein ATL4E OS=Arabidopsis thaliana GN=ATL4E PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.842e-14
Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG-ETTPQPSELGSS 604
            L +++ +  P  +Y E   +K      +C+VCL +++ +E L+ +P C H FH ECID WL SHTTCP+CR +L  +P  + + Q +E+ SS
Sbjct:   87 LSKDIREMLPVVIYKESFIVKDS----QCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSS 174          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.104e-14
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  413 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQP 586
            +C++CL EF +DE+LRL+PKC+H FH  CID WL+SH+ CP+CR+ +      TT QP
Sbjct:  180 DCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV---PTTQQP 234          
The following BLAST results are available for this feature:
BLAST of CB290516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ATL2H_ARATH2.176e-1550.63RING-H2 finger protein ATL2H OS=Arabidopsis thalia... [more]
ATL4G_ARATH2.842e-1540.43RING-H2 finger protein ATL4G OS=Arabidopsis thalia... [more]
ATL3J_ARATH2.842e-1541.38RING-H2 finger protein ATL3J OS=Arabidopsis thalia... [more]
ATL1A_ARATH2.842e-1542.35RING-H2 finger protein ATL1A OS=Arabidopsis thalia... [more]
ATL5K_ARATH3.712e-1536.75RING-H2 finger protein ATL5K OS=Arabidopsis thalia... [more]
ATL3G_ARATH4.848e-1545.56RING-H2 finger protein ATL3G OS=Arabidopsis thalia... [more]
ATL3E_ARATH1.411e-1444.16Putative RING-H2 finger protein ATL3E OS=Arabidops... [more]
ATL5N_ARATH1.842e-1447.30Putative RING-H2 finger protein ATL5N OS=Arabidops... [more]
ATL4E_ARATH1.842e-1439.13RING-H2 finger protein ATL4E OS=Arabidopsis thalia... [more]
ATL4H_ARATH4.104e-1453.45Putative RING-H2 finger protein ATL4H OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290516 ID=CB290516; Name=CB290516; organism=Citrus sinensis; type=EST; length=748bp
GCCCTTGGCAATAATGGGGTCACGACTCTTACCCTACTCCGCCAAACATG
GGACCAATCCCCTTTCTCTCCAGCTCCTCATGCTCCTCGTGGCCCACGCG
CTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGCCCCCGGGCTCCGTCGA
CCCCTACTCCAACATGAAATTCAGCCCCTCACTCGCCATAATAATCGTCG
TGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTCTCCATCTACATTCGC
CACTGCTCCGACTCCAGCAACTCCGTCATCCGCCCCGCCGGCGCCGGAGG
CAACCGCTCCAGGCGCGGCGCCGCCCGCGGCCTCGACCGCGAGGTCATCG
ACACTTTCCCGACCTTCGTGTACTCGGAGGTCAAGACGCTGAAGGTCGGC
AAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGAGTTCGAGGATGACGA
AACGCTGCGTTTGATCCCGAAATGCGACCACGTCTTCCACCCCGAGTGCA
TCGACGCCTGGCTTGAATCGCACACCACGTGTCCTGTTTGCCGCTCGAAT
TTGGCCTCTGAACCCGGTGAGACAACTCCTCAACCCAGTGAGCTGGGCTC
ATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCGCGGTAGCAGCAGAGA
CTCCACAAGAAACACAACCACAGCCACAAGGCTCACAACCACCGGAACCT
CAAGTTATCAGCGTCAACTTTGCTAATCAAACGCTTAATAGGAACCGT
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