CB290516

Overview
NameCB290516
Unique NameCB290516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.104e-14
Identity = 36/92 (39.13%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG-ETTPQPSELGSS 604
            L +++ +  P  +Y E  T+       +C+VCL +++ +E L+ +P C H FH ECID WL SHTTCP+CR +L  +P  + + Q  E+ SS
Sbjct:   73 LSKDIREMLPIVIYKESFTVN----DTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSS 160          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2K_ARATH (RING-H2 finger protein ATL2K OS=Arabidopsis thaliana GN=ATL2K PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.104e-14
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSE 592
            LD  VI + PTFV      +K      ECAVCL+  E+ +  R++P C HVFH  C+D WL + +TCPVCR+          P+P E
Sbjct:   76 LDSLVIASLPTFVVG----IKNDVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPSHPRLEPEPRE 158          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1G_ARATH (RING-H2 finger protein ATL1G OS=Arabidopsis thaliana GN=ATL1G PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.104e-14
Identity = 45/146 (30.82%), Postives = 69/146 (47.26%), Query Frame = 2
Query:  230 FFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL--------ASEPGETTPQPSELGSSEVDLEAQNDAAVA 643
            F+ IY+R  S   +S+                  L +E+ +  P  V+ E  T+       +C+VCL +++ ++ L+ IP C H FH +CID WL SHTTCP+CR  L          +P  +   P E  SS+ + E  N   V+
Sbjct:   42 FYLIYLRRSSSDLSSLGMRTTFIPGNSLSTIELGLSKELREMLPIVVFKESFTVMDS----QCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEEVSSQPESEPVNHRVVS 183          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5G_ARATH (Probable RING-H2 finger protein ATL5G OS=Arabidopsis thaliana GN=ATL5G PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14
Identity = 28/45 (62.22%), Postives = 40/45 (88.89%), Query Frame = 2
Query:  413 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS 547
            +C+VCL+EFE++E+LRL+PKC+H FH  CID WL+SH+ CP+CR+
Sbjct:  141 DCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14
Identity = 31/72 (43.06%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS 547
            LD  +I +   + Y ++          +C+VCL+EF+++E+LRL+PKC+H FH  CID WL+SH+ CP+CR+
Sbjct:  134 LDESLIKSITVYKYRKMDGFVESS---DCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA 202          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5M_ARATH (RING-H2 finger protein ATL5M OS=Arabidopsis thaliana GN=ATL5M PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.037e-13
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  353 TFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 574
            T PT VYS    L++     ECA+CL+EFE  E+++++ KC H FH +CI  WL + ++CP CR+++ S+  ET
Sbjct:   88 TTPTLVYSS--DLELAGAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSET 159          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1E_ARATH (RING-H2 finger protein ATL1E OS=Arabidopsis thaliana GN=ATL1E PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13
Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN 550
            LD+  I+++      E + L  G   + C +CL+E+   ET+R +P+CDH FH +CID WL+ H++CPVCR++
Sbjct:  226 LDQSTIESYKKVELGESRRLP-GTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRNS 297          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL3K_ARATH (RING-H2 finger protein ATL3K OS=Arabidopsis thaliana GN=ATL3K PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13
Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKV-------GKGA-LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSEL 595
            LD  VI+++P F +++  T  V       G+G    C++CL E+ ++E LR++P+C H FH  C+DAWL+ + +CPVCR++    P ++TPQ + L
Sbjct:  100 LDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTP-QSTPQSTPL 194          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5E_ARATH (Putative RING-H2 finger protein ATL5E OS=Arabidopsis thaliana GN=ATL5E PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDL 616
            LDR VI+++P  V  + + L        C++CL ++E  E +R IP+C+H FH +C+D WL +  TCP+CR+         +P PS L +   DL
Sbjct:   67 LDRPVIESYPRIVLGDSRRLPRPNNG-PCSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRN---------SPAPSRLATPLSDL 151          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5B_ARATH (RING-H2 finger protein ATL5B OS=Arabidopsis thaliana GN=ATL5B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553
            + +  +   P   YS    +K    A EC +CL +F + ET+R++PKC+H FH +CID WL SH++CP CR +L
Sbjct:   89 IKKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158          
The following BLAST results are available for this feature:
BLAST of CB290516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ATL4F_ARATH4.104e-1439.13RING-H2 finger protein ATL4F OS=Arabidopsis thalia... [more]
ATL2K_ARATH4.104e-1441.38RING-H2 finger protein ATL2K OS=Arabidopsis thalia... [more]
ATL1G_ARATH4.104e-1430.82RING-H2 finger protein ATL1G OS=Arabidopsis thalia... [more]
ATL5G_ARATH7.001e-1462.22Probable RING-H2 finger protein ATL5G OS=Arabidops... [more]
ATL3A_ARATH7.001e-1443.06RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]
ATL5M_ARATH2.037e-1343.24RING-H2 finger protein ATL5M OS=Arabidopsis thalia... [more]
ATL1E_ARATH4.538e-1341.10RING-H2 finger protein ATL1E OS=Arabidopsis thalia... [more]
ATL3K_ARATH5.927e-1338.54RING-H2 finger protein ATL3K OS=Arabidopsis thalia... [more]
ATL5E_ARATH7.741e-1336.84Putative RING-H2 finger protein ATL5E OS=Arabidops... [more]
ATL5B_ARATH7.741e-1341.89RING-H2 finger protein ATL5B OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290516 ID=CB290516; Name=CB290516; organism=Citrus sinensis; type=EST; length=748bp
GCCCTTGGCAATAATGGGGTCACGACTCTTACCCTACTCCGCCAAACATG
GGACCAATCCCCTTTCTCTCCAGCTCCTCATGCTCCTCGTGGCCCACGCG
CTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGCCCCCGGGCTCCGTCGA
CCCCTACTCCAACATGAAATTCAGCCCCTCACTCGCCATAATAATCGTCG
TGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTCTCCATCTACATTCGC
CACTGCTCCGACTCCAGCAACTCCGTCATCCGCCCCGCCGGCGCCGGAGG
CAACCGCTCCAGGCGCGGCGCCGCCCGCGGCCTCGACCGCGAGGTCATCG
ACACTTTCCCGACCTTCGTGTACTCGGAGGTCAAGACGCTGAAGGTCGGC
AAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGAGTTCGAGGATGACGA
AACGCTGCGTTTGATCCCGAAATGCGACCACGTCTTCCACCCCGAGTGCA
TCGACGCCTGGCTTGAATCGCACACCACGTGTCCTGTTTGCCGCTCGAAT
TTGGCCTCTGAACCCGGTGAGACAACTCCTCAACCCAGTGAGCTGGGCTC
ATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCGCGGTAGCAGCAGAGA
CTCCACAAGAAACACAACCACAGCCACAAGGCTCACAACCACCGGAACCT
CAAGTTATCAGCGTCAACTTTGCTAATCAAACGCTTAATAGGAACCGT
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