CB290516
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13 Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 2 Query: 407 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVD 613 A EC +CL +FED E +R++PKC+H FH CID WL S ++CP CR +L E QPS + S D Sbjct: 111 ATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLE------QPSPMAVSRRD 173
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2L_ARATH (RING-H2 finger protein ATL2L OS=Arabidopsis thaliana GN=ATL2L PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13 Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSE 592 L+ VI + PTF T V A ECAVCL+ ++ + R +P C H+FH +C+D WL + +TCPVCR+ + P P+P E Sbjct: 82 LNPTVIASLPTFTVGA--TDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVEPRP-RLEPEPRE 165
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13 Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 2 Query: 401 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553 K LEC++CL+E + RL+PKC+H FH ECID W +SH+TCP+CR+ + Sbjct: 122 KDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13 Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 2 Query: 401 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 559 K LECAVCL++ D + R++P+C+H FH +CID W +SH+TCP+CR+ + S Sbjct: 115 KDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2I_ARATH (RING-H2 finger protein ATL2I OS=Arabidopsis thaliana GN=ATL2I PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.011e-12 Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN-----LASEPGETTPQPSELGSSEV 610 LD + I ++P +YSE K A CA+CL +++ LR +P C+H+FH +CID WL + TCPVCR++ L++ E P S + ++ + Sbjct: 122 LDEDTIQSYPKILYSEAKGPTT---ASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVAATRM 216
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.320e-12 Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 2 Query: 365 FVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553 F +E + +V A ECA+CL EF D E +R++P C+H FH CID WL SH++CP CR +L Sbjct: 88 FPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSL 150
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2M_ARATH (RING-H2 finger protein ATL2M OS=Arabidopsis thaliana GN=ATL2M PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12 Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKV-----GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 574 LD+ VI+++P F +S+ + G G C++CL E+++ E LR++P+C H FH C+DAWL+ + +CPVCR++ P T Sbjct: 105 LDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTST 190
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1K_ARATH (RING-H2 finger protein ATL1K OS=Arabidopsis thaliana GN=ATL1K PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12 Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA----------SEPGETTPQPSEL 595 + ++ + FP YS L G EC +CL++F E LRL+PKC+H FH CID WL+ H TCP CR+ L S+ T +P+E+ Sbjct: 109 IKKKALRMFPVVSYSPEMNLP-GLDE-ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQADSVTAEPTEI 204
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12 Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 544 + ++ + FP YS L G G EC +CL++F E LRL+PKC+H FH CID WL+ H TCP CR Sbjct: 109 IKKKALRMFPVVSYSREMNLP-GIGE-ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCR 177
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5D_ARATH (Putative RING-H2 finger protein ATL5D OS=Arabidopsis thaliana GN=ATL5D PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12 Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTL----KVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 574 L EVI FP Y E + K C++CL +++ + +R++P C+H+FH C+D WL H TCPVCR++ P T Sbjct: 97 LTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMT 181 The following BLAST results are available for this feature:
BLAST of CB290516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290516 ID=CB290516; Name=CB290516; organism=Citrus sinensis; type=EST; length=748bpback to top |