CB290516

Overview
NameCB290516
Unique NameCB290516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 2
Query:  407 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVD 613
            A EC +CL +FED E +R++PKC+H FH  CID WL S ++CP CR +L  E      QPS +  S  D
Sbjct:  111 ATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLE------QPSPMAVSRRD 173          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2L_ARATH (RING-H2 finger protein ATL2L OS=Arabidopsis thaliana GN=ATL2L PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSE 592
            L+  VI + PTF      T  V   A ECAVCL+  ++ +  R +P C H+FH +C+D WL + +TCPVCR+ +   P    P+P E
Sbjct:   82 LNPTVIASLPTFTVGA--TDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVEPRP-RLEPEPRE 165          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 2
Query:  401 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553
            K  LEC++CL+E    +  RL+PKC+H FH ECID W +SH+TCP+CR+ +
Sbjct:  122 KDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 2
Query:  401 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 559
            K  LECAVCL++  D +  R++P+C+H FH +CID W +SH+TCP+CR+ + S
Sbjct:  115 KDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2I_ARATH (RING-H2 finger protein ATL2I OS=Arabidopsis thaliana GN=ATL2I PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.011e-12
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN-----LASEPGETTPQPSELGSSEV 610
            LD + I ++P  +YSE K       A  CA+CL +++    LR +P C+H+FH +CID WL  + TCPVCR++     L++   E  P  S + ++ +
Sbjct:  122 LDEDTIQSYPKILYSEAKGPTT---ASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVAATRM 216          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.320e-12
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 2
Query:  365 FVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553
            F  +E  + +V   A ECA+CL EF D E +R++P C+H FH  CID WL SH++CP CR +L
Sbjct:   88 FPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSL 150          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2M_ARATH (RING-H2 finger protein ATL2M OS=Arabidopsis thaliana GN=ATL2M PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKV-----GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 574
            LD+ VI+++P F +S+  +        G G   C++CL E+++ E LR++P+C H FH  C+DAWL+ + +CPVCR++    P  T
Sbjct:  105 LDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTST 190          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1K_ARATH (RING-H2 finger protein ATL1K OS=Arabidopsis thaliana GN=ATL1K PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA----------SEPGETTPQPSEL 595
            + ++ +  FP   YS    L  G    EC +CL++F   E LRL+PKC+H FH  CID WL+ H TCP CR+ L           S+    T +P+E+
Sbjct:  109 IKKKALRMFPVVSYSPEMNLP-GLDE-ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQADSVTAEPTEI 204          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 544
            + ++ +  FP   YS    L  G G  EC +CL++F   E LRL+PKC+H FH  CID WL+ H TCP CR
Sbjct:  109 IKKKALRMFPVVSYSREMNLP-GIGE-ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCR 177          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5D_ARATH (Putative RING-H2 finger protein ATL5D OS=Arabidopsis thaliana GN=ATL5D PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12
Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTL----KVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 574
            L  EVI  FP   Y E +      K       C++CL +++  + +R++P C+H+FH  C+D WL  H TCPVCR++    P  T
Sbjct:   97 LTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMT 181          
The following BLAST results are available for this feature:
BLAST of CB290516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ATL3C_ARATH7.741e-1347.83RING-H2 finger protein ATL3C OS=Arabidopsis thalia... [more]
ATL2L_ARATH7.741e-1340.23RING-H2 finger protein ATL2L OS=Arabidopsis thalia... [more]
ATL1P_ARATH7.741e-1352.94RING-H2 finger protein ATL1P OS=Arabidopsis thalia... [more]
ATL1M_ARATH7.741e-1350.94RING-H2 finger protein ATL1M OS=Arabidopsis thalia... [more]
ATL2I_ARATH1.011e-1235.71RING-H2 finger protein ATL2I OS=Arabidopsis thalia... [more]
ATL5A_ARATH1.320e-1249.21RING-H2 finger protein ATL5A OS=Arabidopsis thalia... [more]
ATL2M_ARATH2.941e-1238.37RING-H2 finger protein ATL2M OS=Arabidopsis thalia... [more]
ATL1K_ARATH2.941e-1237.76RING-H2 finger protein ATL1K OS=Arabidopsis thalia... [more]
ATL1J_ARATH2.941e-1246.48RING-H2 finger protein ATL1J OS=Arabidopsis thalia... [more]
ATL5D_ARATH6.553e-1236.47Putative RING-H2 finger protein ATL5D OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290516 ID=CB290516; Name=CB290516; organism=Citrus sinensis; type=EST; length=748bp
GCCCTTGGCAATAATGGGGTCACGACTCTTACCCTACTCCGCCAAACATG
GGACCAATCCCCTTTCTCTCCAGCTCCTCATGCTCCTCGTGGCCCACGCG
CTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGCCCCCGGGCTCCGTCGA
CCCCTACTCCAACATGAAATTCAGCCCCTCACTCGCCATAATAATCGTCG
TGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTCTCCATCTACATTCGC
CACTGCTCCGACTCCAGCAACTCCGTCATCCGCCCCGCCGGCGCCGGAGG
CAACCGCTCCAGGCGCGGCGCCGCCCGCGGCCTCGACCGCGAGGTCATCG
ACACTTTCCCGACCTTCGTGTACTCGGAGGTCAAGACGCTGAAGGTCGGC
AAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGAGTTCGAGGATGACGA
AACGCTGCGTTTGATCCCGAAATGCGACCACGTCTTCCACCCCGAGTGCA
TCGACGCCTGGCTTGAATCGCACACCACGTGTCCTGTTTGCCGCTCGAAT
TTGGCCTCTGAACCCGGTGAGACAACTCCTCAACCCAGTGAGCTGGGCTC
ATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCGCGGTAGCAGCAGAGA
CTCCACAAGAAACACAACCACAGCCACAAGGCTCACAACCACCGGAACCT
CAAGTTATCAGCGTCAACTTTGCTAATCAAACGCTTAATAGGAACCGT
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