CB290516
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11 Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 2 Query: 335 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 604 D+E I + PT ++ + V G LEC VC ++ +E +R +P C+H FH CI WLE H TCPVCR +L E Q +E +S Sbjct: 205 DKEKITSLPTVTVTQEQ---VDMG-LECPVCKEDYTVEEEVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTEASAS 289
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11 Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 2 Query: 335 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 580 D+E I PT +E VG G LEC VC +++ E +R +P C+H+FH CI WLE H +CPVCR +L + T P Sbjct: 206 DKEKIQALPTVPVTEEH---VGSG-LECPVCKDDYALGERVRQLP-CNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNP 282
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4L_ARATH (RING-H2 finger protein ATL4L OS=Arabidopsis thaliana GN=ATL4L PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11 Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 398 GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 544 G + ECA+C+ EF + E +R++P C H FH CID WL S ++CP CR Sbjct: 107 GDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCR 155
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1B_ARATH (RING-H2 finger protein ATL1B OS=Arabidopsis thaliana GN=ATL1B PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11 Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553 L ++V+ + P +S + ECA+CL EF + LR++P+C H FH CID WL SH++CP CR L Sbjct: 85 LKKKVLQSLPKLTFSPESP--ESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQIL 156 The following BLAST results are available for this feature:
BLAST of CB290516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290516 ID=CB290516; Name=CB290516; organism=Citrus sinensis; type=EST; length=748bpback to top |