CB290519

Overview
NameCB290519
Unique NameCB290519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: C513E_DICDI (Probable cytochrome P450 513E1 OS=Dictyostelium discoideum GN=cyp513e1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13
Identity = 53/176 (30.11%), Postives = 83/176 (47.16%), Query Frame = -1
Query:  288 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITR-------LPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL--GSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDW 788
            D+F+AG D+TS++  + +  L++N           +  + K +   +  + R       +PYL  V+KE                 +DVEI G+ + KG Q+  NV++    E T+    +FIPERF+  GSN  F G    L+ FG G R C G  LA      +L +LIN + +
Sbjct:  298 DVFLAGVDSTSNSTIFTLIALVNNSNCQEKLFNEIKNNLKKSDDGHDEIVIRHSLYRSSIPYLSLVMKEVYRLYSVILIGLPHITSEDVEIEGYKIAKGTQIIQNVFSTHLCEKTFPMSKSFIPERFIETGSNNMFGGGQTNLVHFGTGVRDCVGKSLADCEIFTVLATLINRYQF 473          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP2CB_RAT (Cytochrome P450 2C11 OS=Rattus norvegicus GN=Cyp2c11 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 47/168 (27.98%), Postives = 80/168 (47.62%), Query Frame = -1
Query:  285 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWK 788
            D+F AG +TTS+T+ + +  LL +           E+ + +       D +++PY  AVV E                 +D++   + +PKG  V V++ +I  D+  + NP  F P  FL    +FK  ++  +PF AG+RIC G  LA     L   +++ +F+ K
Sbjct:  293 DMFGAGTETTSTTLRYGLLLLLKHVDVTAKVQEEIERVIGRNRSPCMKDRSQMPYTDAVVHEIQRYIDLVPTNLPHLVTRDIKFRNYFIPKGTNVIVSLSSILHDDKEFPNPEKFDPGHFLDERGNFKKSDY-FMPFSAGKRICAGEALARTELFLFFTTILQNFNLK 459          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP2C6_RAT (Cytochrome P450 2C6 OS=Rattus norvegicus GN=Cyp2c6 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 49/177 (27.68%), Postives = 80/177 (45.20%), Query Frame = -1
Query:  258 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWKLDNHNMDME 788
            DLF AG +TTS+T+ +A+  LL  P          ++ V K       D +R+PY  A   E                  D++   + +PKG  +  ++ ++  D   + +P  F P  FL  N  FK  ++  +PF AG+R+C G  LA     L L +++ +F  K   H  D++
Sbjct:  293 DLFGAGTETTSTTLRYALLLLLKCPEVTAKVQEEIDRVVGKHRSPCMQDRSRMPYTDAHDHEVQRFIDLIPTNLPHAVTCDIKFRNYLIPKGTTIITSLSSVLHDSKEFPDPEIFDPGHFLDGNGKFKKSDY-FMPFSAGKRMCAGEGLARMELFLFLTTILQNFKLKSVLHPKDID 468          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP1A4_CHICK (Cytochrome P450 1A4 OS=Gallus gallus GN=CYP1A4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 52/191 (27.23%), Postives = 84/191 (43.98%), Query Frame = -1
Query:  225 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD--FKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKAQ 788
            DLF AG DT ++ + W M      P          +QT+ +      SD   LPY +A + E                 KD  + G+ +PK   VF+N W    DE  W +P +F PERFL +      + +  +++ FG G+R C G  +      L L +++   +  L     +D+  ++GLT++  Q
Sbjct:  324 DLFGAGFDTVTTALSWCMMYAALYPHIQKKIQAELDQTIGRERRPRLSDRGMLPYTEAFILEAFRHSSLLPFTIPHCTTKDTVLNGYYIPKDTCVFINQWQANHDEKIWKDPPSFKPERFLNAAGTELSRTEADKVLIFGLGKRRCIGESIGRWEVFLFLTTILQQLEISLAPGQRVDITPQYGLTMKYKQ 514          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP1A1_ORYLA (Cytochrome P450 1A1 OS=Oryzias latipes GN=cyp1a1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 50/188 (26.60%), Postives = 83/188 (44.15%), Query Frame = -1
Query:  234 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQ--NFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDW-KLDNHNMDMEDKFGLTVQ 788
            DLF AG DT S+ + WA+  L+  P          ++ +        SD + LP   A + E                 +D  + G+ +PK   VF+N W I  D   W +P +F P+RFL  +     +    +++ FG G+R C G  +A     L L  +I    + ++    +DM  ++GLT++
Sbjct:  318 DLFGAGFDTISTALSWAVGYLVAYPDIEKGLFEEIKENIGLNRNPTISDRSNLPLTDAFILEIFRHSSFLPFTIPHCTTRDTSLNGYYIPKDTCVFINQWQINHDPKLWQDPSSFNPDRFLSEDGSEVNRLDGEKVMVFGLGKRRCIGEVIARNEVFLFLAIMIQKLCFEEMPGEPLDMTPEYGLTMK 505          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP255_MOUSE (Cytochrome P450 2C55 OS=Mus musculus GN=Cyp2c55 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.944e-13
Identity = 45/177 (25.42%), Postives = 84/177 (47.46%), Query Frame = -1
Query:  264 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWK--LDNHNMD 788
            D+F+AG +TT+ T+ + +  LL +           +  + +       D TR+PY  A+V E                  +V    + +PKG ++  ++ ++  D+  + NP  F P  FL  N +FK  ++  +PF  G+R+C G  LA     L+L +++ +F+ K  +D  ++D
Sbjct:  293 DIFVAGTETTNITLRYGLLLLLKHTEVTAKVQAEIDHVIGRHRSPCMQDRTRMPYTDAMVHEIQRYIDLIPNNVPHAATCNVRFRSYFIPKGTELVTSLTSVLHDDKEFPNPEVFDPGHFLDENGNFKKSDY-FMPFSIGKRMCVGEALARTELFLILTTILQNFNLKSLVDTKDID 468          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: C518B_DICDI (Probable cytochrome P450 518B1 OS=Dictyostelium discoideum GN=cyp518b1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.944e-13
Identity = 52/192 (27.08%), Postives = 87/192 (45.31%), Query Frame = -1
Query:  240 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDI-------TRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTW-DNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWK-LDNHNMDMEDKFGLT 788
            +L  AG DT SST EW +  L++NP             +    P++ SD+          P   A +KE                 +  E+ G  +PKG  +F ++++I RDE  W +N + F PERFL    D    N+   P+G G+R+C G   +    ++ L +++ +F  K +D   ++    +G+T
Sbjct:  291 ELLAAGTDTNSSTSEWFLTYLVNNPIYQDKIYDELIGALKINKPLKGSDVLINLSHRPLTPLFNATLKEVLRLIPATPFSVPRMSNEGFEVDGIKIPKGTYLFPSMYSIFRDEKYWGENANKFYPERFL---TDSHSNNY--FPYGVGKRMCLGSNFSQHELYICLTNIVLNFKIKSIDGKPLNEIPNYGIT 477          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP2CL_CANFA (Cytochrome P450 2C21 (Fragment) OS=Canis familiaris GN=CYP2C21 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.845e-13
Identity = 46/168 (27.38%), Postives = 77/168 (45.83%), Query Frame = -1
Query:  285 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWK 788
            D+F AG +TTS+T+ + +  LL +P           + V +       D + +PY  AVV E                 +D++   + +PKG  +  ++ ++  DE  + NP  F P  FL  N  FK  ++  + F AG+R+C G  LA     L+L +++  F  K
Sbjct:  290 DVFSAGTETTSTTLRYGLLVLLKHPDVTAKVQEEIHRVVGRHRSPCMQDRSCMPYTDAVVHEIQRYIDLVPNNLPHSVTQDIKFREYLIPKGTTILTSLTSVLHDEKGFPNPDQFDPGHFLDENGSFKKSDY-FMAFSAGKRVCVGEGLARMELFLLLTNILQHFTLK 456          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP2C7_RAT (Cytochrome P450 2C7 OS=Rattus norvegicus GN=Cyp2c7 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.845e-13
Identity = 45/177 (25.42%), Postives = 80/177 (45.20%), Query Frame = -1
Query:  258 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWKLDNHNMDME 788
            DL  AG +T S+T+ +A+  L+  P          ++ + +       D   +PY  A++ E                  D++   + +PKG +V  ++ ++  D   + NP  F P  FL  N +FK  ++  +PF AG+R C G  LA     L L +++ +F+ K   H  D++
Sbjct:  293 DLIGAGTETMSTTLRYALLLLMKYPHVTAKVQEEIDRVIGRHRSPCMQDRKHMPYTDAMIHEVQRFINFVPTNLPHAVTCDIKFRNYLIPKGTKVLTSLTSVLHDSKEFPNPEMFDPGHFLDENGNFKKSDY-FLPFSAGKRACVGEGLARMQLFLFLTTILQNFNLKSLVHPKDID 468          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP2A5_MOUSE (Cytochrome P450 2A5 OS=Mus musculus GN=Cyp2a5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.845e-13
Identity = 46/177 (25.99%), Postives = 81/177 (45.76%), Query Frame = -1
Query:  258 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWKLDNHNMDME 788
            +LF AG +T S+T+ +    L+ +P          ++ + +    +  D  ++PY +AV+ E                 KD +   F +PKG +VF  + ++ +D   + NP  F P+ FL     FK +N   +PF  G+R C G  LA     L L +++ +F +K      D++
Sbjct:  297 NLFFAGTETVSTTLRYGFLLLMKHPDIEAKVHEEIDRVIGRNRQPKYEDRMKMPYTEAVIHEIQRFADMIPMGLARRVTKDTKFRDFLLPKGTEVFPMLGSVLKDPKFFSNPKDFNPKHFLDDKGQFK-KNDAFVPFSIGKRYCFGEGLARMELFLFLTNIMQNFHFKSTQAPQDID 472          
The following BLAST results are available for this feature:
BLAST of CB290519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
C513E_DICDI1.726e-1330.11Probable cytochrome P450 513E1 OS=Dictyostelium di... [more]
CP2CB_RAT2.254e-1327.98Cytochrome P450 2C11 OS=Rattus norvegicus GN=Cyp2c... [more]
CP2C6_RAT2.254e-1327.68Cytochrome P450 2C6 OS=Rattus norvegicus GN=Cyp2c6... [more]
CP1A4_CHICK2.254e-1327.23Cytochrome P450 1A4 OS=Gallus gallus GN=CYP1A4 PE=... [more]
CP1A1_ORYLA2.254e-1326.60Cytochrome P450 1A1 OS=Oryzias latipes GN=cyp1a1 P... [more]
CP255_MOUSE2.944e-1325.42Cytochrome P450 2C55 OS=Mus musculus GN=Cyp2c55 PE... [more]
C518B_DICDI2.944e-1327.08Probable cytochrome P450 518B1 OS=Dictyostelium di... [more]
CP2CL_CANFA3.845e-1327.38Cytochrome P450 2C21 (Fragment) OS=Canis familiari... [more]
CP2C7_RAT3.845e-1325.42Cytochrome P450 2C7 OS=Rattus norvegicus GN=Cyp2c7... [more]
CP2A5_MOUSE3.845e-1325.99Cytochrome P450 2A5 OS=Mus musculus GN=Cyp2a5 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ca05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290519 ID=CB290519; Name=CB290519; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTTTCGCATGACTTTATAGTTTATTGAAGATCAACTC
TGTTAAGTTGCGTGTCTACATAAAAAAAAATAAGAGCGCCCACACCTGAG
AATGATTACACACACATATAACTAACCACCAAGCGCTTTATATAGTGGCT
ACCACCAAGCGCTTTATATATTGGCTACAAACTATAGTATAAAACTAGAT
GGCACCAGGGACAGCATGAAGGGGTTGAGCCTTCTGAACGGTGAGGCCAA
ATTTATCTTCCATGTCCATGTTGTGGTTATCAAGCTTCCAATCAAAAGAG
TTAATAAGGGAACCCAACATTAGATGGAACATTCTGATTGCCAATGGTAA
ACCAGGACAAATTCGTCGTCCAGCTCCGAAGGGAATTAGCTCAAAATTCT
GGCCTTTGAAATCAGCATTTGACCCTAAAAACCTTTCGGGAATAAAAGTG
TGAGGGTTGTCCCATGTGCTTTCATCTCTGCCAATAGCCCATACATTGAC
AAAAACTTGTGCACCTTTTGGCACTGGGAAGCCTGCAATTTCAACATCTT
TTGTGGCTTTGCGGGGAAGTAATAAGGGAGCTGCAGGGTGCAATCTCAAA
GTTTCTTTAACAACAGCTTGTAGATAAGGTAGCCGAGTGATGTCAGATTC
CTCAATTGGGTTACACTTGCAAACTGTTTGTTCTAGCTCCAATTTTGCTT
TCAATAAAGCCTCAGGGTTGTGGAGTAGTTCTGCCATTGCCCATTCCATT
GTACTTGAAGTTGTGTCATTCCCCGCAATAAACAAATCCGCCTCGTG
back to top