CB290520

Overview
NameCB290520
Unique NameCB290520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290520 vs. ExPASy Swiss-Prot
Match: C49A1_DROME (Probable cytochrome P450 49a1 OS=Drosophila melanogaster GN=Cyp49a1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 53/178 (29.78%), Postives = 73/178 (41.01%), Query Frame = 1
Query:    4 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVCKCNPIEESDITR-----LPYLQAVVKEXXXXXXXXXXXXXXXXXXDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKG--------QNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSF 498
            DLF+ G DTTS      + +L  NP             + K  P  E+DI +     +PYL+A VKE                  D  I G+ VPKG  V      +  D + +  P  F+PER+L  + D  G          F  +PFG GRR+C G   A   LH +L  +   +
Sbjct:  385 DLFLVGVDTTSVAASSTIYQLAKNPDKQKKLF----DELQKVFPHREADINQNVLEQMPYLRACVKETLRMRPVVIANGRSLQS-DAVINGYHVPKGTHVIFPHLVVSNDPAYFPEPKRFLPERWLKQSTDAAGCPHANQKIHPFVSLPFGFGRRMCVGRRFAEIELHTLLAKIFRKY 557          
BLAST of CB290520 vs. ExPASy Swiss-Prot
Match: CP3A8_MACFA (Cytochrome P450 3A8 OS=Macaca fascicularis GN=CYP3A8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 46/164 (28.05%), Postives = 70/164 (42.68%), Query Frame = 1
Query:   16 AGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXXDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWK 507
            AG +TTSS + + + EL  +P             +    P     + ++ YL  VV E                  DVEI G  +PKG  V +  +A+  D   W  P  F+PERF   N D     +   PFG+G R C G+  A+  + L +  ++ +F +K
Sbjct:  305 AGYETTSSVLSFIIYELATHPDVQQKLQEEIDTVLPNKAPPTYDTVLQMEYLDMVVNETLRIFPIAMRLERVCKK-DVEINGIFIPKGVVVMIPSYALHHDPKYWPEPEKFLPERFSKKNND-NIDPYIYTPFGSGPRNCIGMRFALMNMKLAIIRVLQNFSFK 466          
BLAST of CB290520 vs. ExPASy Swiss-Prot
Match: CP27B_HUMAN (25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial OS=Homo sapiens GN=CYP27B1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 47/168 (27.98%), Postives = 76/168 (45.24%), Query Frame = 1
Query:    4 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVCKCNPIEESD--ITRLPYLQAVVKEXXXXXXXXXXXXXXXXXXDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 501
            +L +AG DT S+T+ WA+ EL  +P             +   +    S   +++LP L+AVVKE                  D+ +  + +PK   V +  +A  RD + +  P++F P R+LG         F  +PFG G+R C G  LA   L + L  ++  F+
Sbjct:  313 ELLLAGVDTVSNTLSWALYELSRHPEVQTALHSEITAALSPGSSAYPSATVLSQLPLLKAVVKE-VLRLYPVVPGNSRVPDKDIHVGDYIIPKNTLVTLCHYATSRDPAQFPEPNSFRPARWLGEGP--TPHPFASLPFGFGKRSCMGRRLAELELQMALAQILTHFE 477          
BLAST of CB290520 vs. ExPASy Swiss-Prot
Match: CP27A_HUMAN (Sterol 26-hydroxylase, mitochondrial OS=Homo sapiens GN=CYP27A1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 46/168 (27.38%), Postives = 73/168 (43.45%), Query Frame = 1
Query:    4 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXXDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQ---NFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSF 498
            +L +AG DTTS+T+ WA+  L  +P             V      +  D   +P L+AV+KE                  ++E+ GF  PK  Q     + + RD + +  P +F P R+L ++     +    F  +PFG G R C G  +A   + L+L  LI  +
Sbjct:  331 ELLMAGVDTTSNTLTWALYHLSKDPEIQEALHEEVVGVVPAGQVPQHKDFAHMPLLKAVLKETLRLYPVVPTNSRIIEK-EIEVDGFLFPKNTQFVFCHYVVSRDPTAFSEPESFQPHRWLRNSQPATPRIQHPFGSVPFGYGVRACLGRRIAELEMQLLLARLIQKY 497          
BLAST of CB290520 vs. ExPASy Swiss-Prot
Match: CP3A7_HUMAN (Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 47/164 (28.66%), Postives = 69/164 (42.07%), Query Frame = 1
Query:   16 AGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXXDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWK 507
            AG +TTSS + + + EL  +P             +    P     + +L YL  VV E                  DVEI G  +PKG  V +  + +  D   W  P  F+PERF   N D     +   PFG+G R C G+  A+  + L L  ++ +F +K
Sbjct:  305 AGYETTSSVLSFIIYELATHPDVQQKVQKEIDTVLPNKAPPTYDTVLQLEYLDMVVNETLRLFPVAMRLERVCKK-DVEINGMFIPKGVVVMIPSYVLHHDPKYWREPEKFLPERFSKKNKD-NIDPYIYTPFGSGPRNCIGMRFALVNMKLALVRVLQNFSFK 466          
BLAST of CB290520 vs. ExPASy Swiss-Prot
Match: CP304_DROME (Probable cytochrome P450 304a1 OS=Drosophila melanogaster GN=Cyp304a1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 36/121 (29.75%), Postives = 57/121 (47.11%), Query Frame = 1
Query:  148 DITRLPYLQAVVKEXXXXXXXXXXXXXXXXXXDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 510
            D   LP+ +A ++E                  D E+ G+ +PK   V  +++A   D   W +P  F PERFL ++     +    +PFGAG+R+C G   A  ML L+  ++   FD+ L
Sbjct:  359 DRKNLPFTEATIREGLRIETLVPSDVPHKALEDTELLGYRIPKDTIVVPSLYAFHSDARIWSDPEQFRPERFLDADGKLCLKLDVSLPFGAGKRLCAGETFARNMLFLVTATMCQHFDFVL 479          
BLAST of CB290520 vs. ExPASy Swiss-Prot
Match: C5082_DICDI (Probable cytochrome P450 508A2 OS=Dictyostelium discoideum GN=cyp508a2-1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 50/199 (25.13%), Postives = 92/199 (46.23%), Query Frame = 1
Query:    1 ADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVC-----------KCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXXDVEIA-GFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWK-LDNHNMDMEDKFGLTVQ 558
            +D F+AG DT+++++E  +  L++ P             +            + N +  SD    P++ ++ KE                  D+ +  G  +PK AQ+ +N  A+ R+E  ++NP+ F P RFL S++     N   +PF  G R C G   A   +++ L ++I +F +K +D   +D    +GLT++
Sbjct:  288 SDFFLAGVDTSATSLELIVMMLINYPEYQEKAYNEIKSALSSNGGGGGGGLTQRNKVLLSDRQSTPFVVSLFKETLRYKPISPFGLPRSTTSDIILNNGQFIPKNAQILINYHALSRNEEYFENPNQFDPTRFLNSDS-----NPAFMPFSIGPRNCVGSNFAQDEIYIALSNMILNFKFKSIDGKPVDETQTYGLTLK 481          
The following BLAST results are available for this feature:
BLAST of CB290520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 387
Match NameE-valueIdentityDescription
C49A1_DROME4.637e-1129.78Probable cytochrome P450 49a1 OS=Drosophila melano... [more]
CP3A8_MACFA6.056e-1128.05Cytochrome P450 3A8 OS=Macaca fascicularis GN=CYP3... [more]
CP27B_HUMAN6.056e-1127.9825-hydroxyvitamin D-1 alpha hydroxylase, mitochond... [more]
CP27A_HUMAN6.056e-1127.38Sterol 26-hydroxylase, mitochondrial OS=Homo sapie... [more]
CP3A7_HUMAN7.909e-1128.66Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1... [more]
CP304_DROME7.909e-1129.75Probable cytochrome P450 304a1 OS=Drosophila melan... [more]
C5082_DICDI7.909e-1125.13Probable cytochrome P450 508A2 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290520 ID=CB290520; Name=CB290520; organism=Citrus sinensis; type=EST; length=790bp
GCGGATTTGTTTATTGCGGGGAATGACACAACTTCAAGTACAATGGAATG
GGCAATGGCAGAACTACTCCACAACCCTGAGGCTTTATTGAAAGCAAAAT
TGGAGCTAGAACAAACAGTTTGCAAGTGTAACCCAATTGAGGAATCTGAC
ATCACTCGGCTACCTTATCTACAAGCTGTTGTTAAAGAAACTTTGAGATT
GCACCCTGCAGCTCCCTTATTACTTCCCCGCAAAGCCACAAAAGATGTTG
AAATTGCAGGCTTCACAGTGCCAAAAGGTGCACAAGTTTTTGTCAATGTA
TGGGCTATTGGCAGAGATGAAAGCACATGGGACAACCCTCACACTTTTAT
TCCCGAAAGGTTCTTAGGGTCAAATGCTGATTTCAAAGGCCAGAATTTTG
AGCTAATTCCCTTCGGAGCTGGACGACGAATTTGTCCTGGTTTACCATTG
GCAATCAGAATGTTACATCTAATGTTGGGTTCACTTATTAACTCTTTTGA
TTGGAAGCTTGATAACCACAACATGGACATGGAAGATAAATTTGGCCTCA
CCGTACAGAAGGCTCAACCCCTTCATGCTGTCCCTGGTGCCATCTAGTTC
TATACTATAGTTCGTAGCCAATATATAAAGCGCTTGGTGGTAGCCACTAT
ATAAAGCGCTTGGTGGTTAGTTATATGTGTGTGTAATCATTCTCAGGTGT
GGGCGCTCTTATTTTTTTTTATGTAGACACGCAACTTAACAGAGTTAATC
TTCAATAAACTATAAAGTCATGCGAAAAAAAAAAAAAAAA
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