CB290532

Overview
NameCB290532
Unique NameCB290532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPA_BLAEM (Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.964e-13
Identity = 55/165 (33.33%), Postives = 78/165 (47.27%), Query Frame = -3
Query:  332 MQAMLGSWNKNSVGG--KHMGSELAQRVGINEIA--ESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPD 814
            +Q ++G     S GG  K M S L   V +N     ES  AF   Y  T LFG+ A   P     L   +  E   +A  +S+ +V RA+NQLKSSLL++++      EDIGRQ+L   +R+   EL   I +V    + RVA   +      +A    +  L D
Sbjct:  282 LQVLMGGGGAFSAGGPGKGMYSRLYTNV-LNRYRWMESCAAFQHAYSSTSLFGISASCVPSFNPHLCNVLAGEFVHMARNLSDEEVARAKNQLKSSLLMNLESQVITVEDIGRQVLAQNQRLEPLELVNNISAVTRDDLVRVAEALVAKPPTMVAVGEDLTKLTD 445          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: Y338_RICFE (Uncharacterized zinc protease RF_0338 OS=Rickettsia felis GN=RF_0338 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.691e-11
Identity = 43/142 (30.28%), Postives = 78/142 (54.93%), Query Frame = -3
Query:  350 GKHMGSELAQRVGIN-EIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGP 772
            G  M S L Q +     +A ++ ++N+ Y D+G+F +YA    D L+ L   +  E TK+  +V+E ++ RA+ QL+S+LL+  +  +  +E+IG+    +G+ IP  E+   I ++ A  +   AN+ I+      A +GP
Sbjct:  266 GGGMSSRLFQHIREKLGLAYAVGSYNSTYSDSGVFTIYASTAHDKLELLYKELKTEITKMTEKVNEEEMIRAKTQLRSNLLMAQEKVAYKSEEIGKNYAAFGKYIPPEEIMEIITNIKADDIINTANK-IFSSITTSAIIGP 406          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: QCR2_HUMAN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 46/163 (28.22%), Postives = 84/163 (51.53%), Query Frame = -3
Query:  335 VMQAMLGSWNKNSVGGKHMGSELAQRVG-INEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLP 817
            V+Q +LG+   +   G +  S L Q V    +    + AFN +Y D+GLFG+Y +++     D+  A   +   +A   +S  DV  A+N+LK+  L+ ++ +    E++G Q L  G  +P + +  +IDSV  + +   A +F+  +  ++AA G +   P
Sbjct:  288 VLQHVLGA-GPHVKRGSNTTSHLHQAVAKATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSECFLEEVGSQALVAGSYMPPSTVLQQIDSVANADIINAAKKFVSGQK-SMAASGNLGHTP 448          
The following BLAST results are available for this feature:
BLAST of CB290532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
MPPA_BLAEM8.964e-1333.33Mitochondrial-processing peptidase subunit alpha O... [more]
Y338_RICFE1.691e-1130.28Uncharacterized zinc protease RF_0338 OS=Rickettsi... [more]
QCR2_HUMAN6.424e-1128.22Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290532 ID=CB290532; Name=CB290532; organism=Citrus sinensis; type=EST; length=819bp
TTTTTTTTTTTTTTTTTGCAGCTGAAAATTTATCATCATTCCCAGTTGTT
GCTTGAGCTGTTCAGCTCAAAGCAATGAAAATCCGAGGGCCAAATCACTG
AAGACAGCTTACTTATTTCCTGAACAAATTATGAAGTTACAGAAGCAAGA
GCTAGAAAAGAATTCAATAAAATACCATAGCCCTGAAGCCTCTCCCAAGG
GGATTGATTGTGTAAATTGCAACCCAAAAATTGTTTGAAATCTCCGCCCA
GGAAGGCGGGGATGCAGTAATGAACAACCATGAGATAACTTAGTATCTAT
TCCAGTAGGGTCTGCGTCTGAACCAGTTGTAGTCGGGTAAACCTTGAATT
GGACCCATTGCAGCAATTGCGATATCCCTGTCGTAAATAAATCTGTTTGC
AACGCGCTTGACAGGGCTTGCATCTACGGAGTCTATCCTAGCAAACAATT
CAGCAAATGGGATTCTTCGACCATATGTAAGCAGCTGGCGTCCAATATCT
TCAGCTACAGGGCTTGTTCCATCAATGTGAAGCAACAGGGATGATTTCAA
CTGATTACGGGCACGAGTGACATCAGCTTCTGAAACCCGATAAGCTAACT
TGGTAGTCTCGTACATAATTGCATAGGCCAAATCATCTAAGCAATCCGGC
TTAGCAACAGCATAAACACCAAACAGACCAGTGTCTTTGTAGTTCGTGTT
GAAGGCCATCATGCTTTCTGCAATTTCATTAATGCCAACTCTCTGTGCCA
GCTCGGAACCCATGTGCTTTCCACCCACTGAATTTTTATTCCATGAACCC
AACATTGCCTGCATAACCA
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