CB290533

Overview
NameCB290533
Unique NameCB290533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.507e-50
Identity = 105/192 (54.69%), Postives = 128/192 (66.67%), Query Frame = 2
Query:  272 PTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHY 847
            P L       A P+T+ TTL NGL VATE +  A+TATV V +DAGSR ET + NG AHFLEH+ FKGT+ R+ + LE E EN G HLNAYTSREQT YYA      V NA+ +LADIL NS+   + + RER VILR           V+FDHLHATA+Q  PLGRTILGP +NI+++T+E L  YI  +Y
Sbjct:    8 PKLVRRFATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISASAVERERQVILREQEEVDKMADEVVFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQYIKDNY 199          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 7.481e-50
Identity = 95/204 (46.57%), Postives = 137/204 (67.16%), Query Frame = 2
Query:  242 PKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 853
            P  L+  +   T T    +   PET+++ L NGLRVA+E + +  T TVGVWID GSRFET++ NG  +FLEH+ FKGT+ R    LE+E+E+MG HLNAY++RE T YY K L KD+  A+++L DI+QN + + ++I +ERDVILR           V+F++LHATAFQ TPL + + GP++N++ +++  L  Y+ THY A
Sbjct:   24 PALLRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQS-SQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQENDASMRDVVFNYLHATAFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKA 226          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.276e-49
Identity = 97/180 (53.89%), Postives = 126/180 (70.00%), Query Frame = 2
Query:  308 PETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHY 847
            P T+ + LPNGL +ATE      +ATVG+++DAGSR E  + NGTAHFLEH+ FKGT+ R+ + +E EIEN+G HLNAYTSRE T YYAK L +D+  A+DIL+DIL  S  D + I RERDVI+R           V+FDHLH   ++  PLGRTILGP +NIK+IT+  L++YI  +Y
Sbjct:   24 PGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRSQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNY 203          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.713e-49
Identity = 94/204 (46.08%), Postives = 140/204 (68.63%), Query Frame = 2
Query:  242 PKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 853
            P  L+  +   T T    + + PET+++ L NGLRVA+E +  A T TVGVWIDAGSR+ET++ NG  +FLEH+ FKGT+ R    LE+E+E++G HLNAY++RE T Y  K L KD+   +++LADI+QNS+ + ++I +ERDVILR           V+FD+LHATAFQ TPL + + GP++N++ +++  L +Y++ +Y A
Sbjct:   24 PALLRLPALRGTATFAQALQSVPETQVSILDNGLRVASEQSSHA-TCTVGVWIDAGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNSSLEDSQIEKERDVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLNRNYKA 226          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 4.849e-49
Identity = 92/204 (45.10%), Postives = 139/204 (68.14%), Query Frame = 2
Query:  242 PKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 853
            P  L+      T T    + + PET+++ L NGLRVA+E + +  T TVGVWIDAGSR+E+++ NG  +F+EH+ FKGT+ R    LE+E+E+MG HLNAY++RE T YY K L KD+  A+++LADI+QN + + ++I +ERDVIL+           V+F++LHATAFQ TPL +++ GP++N++ +++  L  Y+  HY A
Sbjct:   24 PALLRSSDLRGTATYAQALQSVPETQVSQLDNGLRVASEQS-SQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 226          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.407e-48
Identity = 92/204 (45.10%), Postives = 137/204 (67.16%), Query Frame = 2
Query:  242 PKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 853
            P  L+  +   T T    + + PET+++ L NGLRVA+E + +  T TVGVWID GSR+ET++ NG  +FLEH+ FKGT+ R    LE+E+E++G HLNAY++RE T Y  K L KD+   +++LADI+QN + + ++I +ERDVILR           V+FD+LHATAFQ TPL + + GP++N++ +++  L +Y+  HY A
Sbjct:   24 PALLRLPALRGTATFVQALQSVPETQVSVLDNGLRVASEQS-SHPTCTVGVWIDVGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNISLEDSQIEKERDVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLSRHYKA 226          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: QCR1_EUGGR (Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.907e-45
Identity = 97/184 (52.72%), Postives = 122/184 (66.30%), Query Frame = 2
Query:  302 AAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNI-KTITKEHLQNYIHTHYT 850
            AA  T    LPNG R+A+ES     T TVGVWIDAGSR+ET++ NG AHFLEHM FKGT KR+ +D+E  +E MG HLNAYTSRE T YY K   KDV  A+DILADIL NS   +  +  ER  I++           V+ DHLH+ AF+ + LG +ILGP +NI K+ITK  + +++ THYT
Sbjct:   23 AARPTLQNALPNGFRIASESK-DGDTCTVGVWIDAGSRWETEKNNGVAHFLEHMNFKGTGKRSRQDIEFGMEKMGAHLNAYTSREHTCYYVKCFKKDVPEAVDILADILLNSKRTEQDLDAERQTIVQEKEDVEARIDEVLMDHLHSAAFEGSGLGLSILGPLENIQKSITKGMIDDFVKTHYT 205          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: UCR1_CAEEL (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Caenorhabditis elegans GN=ucr-1 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 7.760e-39
Identity = 81/184 (44.02%), Postives = 117/184 (63.59%), Query Frame = 2
Query:  296 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHY 847
            + +AP+ ++TTL NG RV TE N +A TATVGVWI+ GSRFE ++ NG AHFLE +I KGT KR +  LE E+  +G  LN++T R+QT  + +   +DV   +DILAD+L+NS  + + I  ER  +L+           V+FD LHA  FQ TPL  ++LG +++I  I+ + L+ +   HY
Sbjct:   32 LASAPQAEVTTLKNGFRVVTEDNGSA-TATVGVWIETGSRFENEKNNGVAHFLERLIHKGTGKRASAALESELNAIGAKLNSFTERDQTAVFVQAGAQDVEKVVDILADVLRNSKLEASTIDTERVNLLKELEASDDYHQLVLFDMLHAAGFQGTPLALSVLGTSESIPNISAQQLKEWQEDHY 214          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: YMXG_BACSU (Uncharacterized zinc protease ymxG OS=Bacillus subtilis GN=ymxG PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.618e-36
Identity = 71/175 (40.57%), Postives = 107/175 (61.14%), Query Frame = 2
Query:  326 TLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYT 850
            T  NG+R+  E+N   ++  +GVWI  GSR ET E NG +HFLEHM FKGT  ++AR++ E  + +GG +NA+TS+E T YYAKVLD+  N ALD+LAD+  +STFD+  + +E++V+             ++ D L    +    LG  ILG  + + +   + L+ Y+H +YT
Sbjct:    6 TCQNGVRIVLENNPTVRSVAIGVWIGTGSRHETPEINGISHFLEHMFFKGTSTKSAREIAESFDRIGGQVNAFTSKEYTCYYAKVLDEHANYALDVLADMFFHSTFDENELKKEKNVVYEEIKMYEDAPDDIVHDLLSKATYGNHSLGYPILGTEETLASFNGDSLRQYMHDYYT 180          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: Y338_RICFE (Uncharacterized zinc protease RF_0338 OS=Rickettsia felis GN=RF_0338 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.049e-35
Identity = 73/178 (41.01%), Postives = 109/178 (61.24%), Query Frame = 2
Query:  320 ITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 853
            I+ L NGL V T +     +  + +    GSR+E  E  G +HFLEHM FKGT  RTA+ + EE + +GGH NAYT  E+T YYA+VL ++ + AL+ILADI+QNS F +  I +E  VIL+           +I++  +++ ++  PLG+ ILG ++ + + TKEH  ++I  HY A
Sbjct:    7 ISKLKNGLTVLTYNMPYVDSVAINLITKVGSRYENSEEEGISHFLEHMAFKGTTTRTAKQIAEEFDEIGGHFNAYTGHEKTIYYARVLSENCDKALNILADIIQNSIFAEEEIAKEYQVILQEIAHSQDNPDDLIYEKFYSSVYKDQPLGKPILGASKTLSSFTKEHFLSFIDKHYNA 184          
The following BLAST results are available for this feature:
BLAST of CB290533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
MPPB_SCHPO1.507e-5054.69Probable mitochondrial-processing peptidase subuni... [more]
QCR1_HUMAN7.481e-5046.57Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_YEAST1.276e-4953.89Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_MOUSE3.713e-4946.08Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_BOVIN4.849e-4945.10Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_RAT2.407e-4845.10Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_EUGGR1.907e-4552.72Ubiquinol-cytochrome-c reductase complex core prot... [more]
UCR1_CAEEL7.760e-3944.02Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
YMXG_BACSU1.618e-3640.57Uncharacterized zinc protease ymxG OS=Bacillus sub... [more]
Y338_RICFE1.049e-3541.01Uncharacterized zinc protease RF_0338 OS=Rickettsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ca12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290533 ID=CB290533; Name=CB290533; organism=Citrus sinensis; type=EST; length=855bp
GCACTAGGATCATCAGTGAGTCCAAACGATGGCGTTTAAGCATCTTTTAA
CCCTAGCTCGCCGGTCTCACAGGCCTTCGTCCACGGCCCTCTTTACCGCC
ATCCGATCCTCCTCCTCCGCCTCACCCCTCGCCACGTCACCATCGTCTCC
GCCGCCGTCCCCGCCTCCCCCAAATGTCATGATCTACGACCGTCTCGCCG
AAGCCGTCAAAGCCAAGCTCAAAAACCTAGAAAACCCCGACCCGAAGTTC
TTAAAGTACGGATCCCCGCACCCGACCCTTACTTCCCACACGCACATCCT
CGCCGCGCCGGAGACCAAAATCACGACTTTGCCTAACGGACTCCGCGTCG
CCACCGAGTCGAACCTCGCCGCGAAGACGGCCACAGTTGGAGTTTGGATT
GACGCCGGCTCGAGGTTCGAGACTGATGAGACGAACGGGACGGCTCATTT
CTTGGAGCATATGATATTCAAGGGGACGGAGAAGCGGACTGCGAGAGATT
TGGAGGAGGAGATCGAGAATATGGGGGGGCATTTGAATGCTTACACTAGC
AGGGAACAGACGACCTATTATGCCAAGGTGTTGGATAAGGATGTGAATAA
TGCTTTGGATATTTTGGCTGATATTTTGCAGAACTCGACGTTTGATCAAG
CGAGGATCACCAGGGAACGGGATGTTATTTTGAGAGAAATGGAGGAGGTT
GAGGGGCAAACAGAGGAAGTCATTTTTGATCATTTGCATGCAACTGCATT
CCAGTACACTCCTTTGGGGAGAACTATTCTCGGTCCTGCTCAGAATATCA
AGACAATCACAAAAGAACATCTGCAGAACTATATTCACACTCACTATACT
GCTCC
back to top