CB290538

Overview
NameCB290538
Unique NameCB290538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ECOSE (Zinc transporter zupT OS=Escherichia coli (strain SE11) GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3 
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252
[Close]
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ECOLU (Zinc transporter zupT OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3 
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252
[Close]
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ECOLI (Zinc transporter zupT OS=Escherichia coli (strain K12) GN=zupT PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3 
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252
[Close]
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ECOLC (Zinc transporter zupT OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3 
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252
[Close]
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ECOL6 (Zinc transporter zupT OS=Escherichia coli O6 GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3 
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252
[Close]
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ECOL5 (Zinc transporter zupT OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3 
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252
[Close]
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ECOK1 (Zinc transporter zupT OS=Escherichia coli O1:K1 / APEC GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3 
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252
[Close]
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ECOHS (Zinc transporter zupT OS=Escherichia coli O9:H4 (strain HS) GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3 
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252
[Close]
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ECODH (Zinc transporter zupT OS=Escherichia coli (strain K12 / DH10B) GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3 
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252
[Close]
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ECOBW (Zinc transporter zupT OS=Escherichia coli (strain K12 / BW2952) GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3 
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252
The following BLAST results are available for this feature:
BLAST of CB290538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ZUPT_ECOSE3.775e-2639.51Zinc transporter zupT OS=Escherichia coli (strain ... [more]
ZUPT_ECOLU3.775e-2639.51Zinc transporter zupT OS=Escherichia coli O17:K52:... [more]
ZUPT_ECOLI3.775e-2639.51Zinc transporter zupT OS=Escherichia coli (strain ... [more]
ZUPT_ECOLC3.775e-2639.51Zinc transporter zupT OS=Escherichia coli (strain ... [more]
ZUPT_ECOL63.775e-2639.51Zinc transporter zupT OS=Escherichia coli O6 GN=zu... [more]
ZUPT_ECOL53.775e-2639.51Zinc transporter zupT OS=Escherichia coli O6:K15:H... [more]
ZUPT_ECOK13.775e-2639.51Zinc transporter zupT OS=Escherichia coli O1:K1 / ... [more]
ZUPT_ECOHS3.775e-2639.51Zinc transporter zupT OS=Escherichia coli O9:H4 (s... [more]
ZUPT_ECODH3.775e-2639.51Zinc transporter zupT OS=Escherichia coli (strain ... [more]
ZUPT_ECOBW3.775e-2639.51Zinc transporter zupT OS=Escherichia coli (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290538 ID=CB290538; Name=CB290538; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTCTGAGGAAAGACAATAATAAAAACCTCCTAAGC
CTTTGGGGTCTTTTTCTTGTCACATACATTTTCCATTTGAGCGTACAATT
TTGAGTTGAATCATAAGAATTACTATTTTTCATAGCAGCTCCACAGGTTG
GCTTTTTGGCTAAAGAACAGTAAGGCAGGCAGCAACCTTATGATAGAAAC
CATCGAGGCAGTTCAGGAATGTACAAATGTCATGACATGTGGCAGCTACA
AGCTCATCTCTGCCGGCAAGCTGATTTCAAGAAAATATAAGCTTGCAGAC
ATGAAAGCCATCCCAACGAATACAGCTTTCACGGCTTGCTTCTGACCCGC
ATAATCAAAGGCCAACGGCAGCATTTCATGCAAAGTTAGGAAGGCCATCA
CTCCCCCAACTGATCCTAGCAAACCCTCGAGAATTTCAGGACTTAAACTG
CTTGGAAATAAGTAGGCCACAATTATAACTCCAAGAGGCTCCGCAAAACC
AGAAAGAGTAGCCAATTTGAATGCCTGCCACTTGCTCTGTGTTGCAAAAT
AAACAGGAAGAGCAACAGCAACACCCTCAGGGATGTTGTGCAAAGCAATG
GCAACTGCCAAATTAAGGCCAACACGAAGGCCCTTCATTGATCCAAGAAA
TACGGCCATTCCCTCAGGAAAATTGTGCAAGCTTATGCCTACGGCTGTAA
TAATCCCACTAAAAAGAACTTGGCGACGATGCTTTTTCATAATGTCCTTA
CCCCCTTCATCCTTGTTTTTCTTTTTAC
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