CB290544

Overview
NameCB290544
Unique NameCB290544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = -2
Query:  603 NHPGSVAIEGGGMAFQLYESGIFTG--RCGTSL-DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 863
            N P +V ++    +FQLY+ G      +C + + +H VTAVGYG+ +   YWI++NSWG+SWG+AGY  + R+        CGI  +++Y
Sbjct:  216 NGPVAVGMDASRPSFQLYKKGTIYSDTKCRSRMMNHCVTAVGYGSNSNGKYWIIRNSWGTSWGDAGYFLLARD----SNNMCGIGRDSNY 301          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12
Identity = 45/98 (45.92%), Postives = 54/98 (55.10%), Query Frame = -2
Query:  603 KAVAN-HPGSVAIEGGGMAFQLYESGIF-TGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            KAVA   P SVA++    + Q Y SGI+    C +  LDHGV  VGYG E    N   YW+VKNSWG  WG  GYI+    +A      CG+A  ASY
Sbjct:  237 KAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHGVLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMDGYIK----IAKDRNNHCGLATAASY 330          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = -2
Query:  603 FQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 821
            F +Y+SG+++     +    ++H V AVGYG +NG  YWIVKNSWGS+WG  GY  +ER         CG+A  ASY
Sbjct:  257 FMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSNWGNNGYFLIERG-----KNMCGLAACASY 328          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CPP1_ENTHI (Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.781e-12
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = -2
Query:  636 VAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM--ERNVAGTLT 848
            V+I+   + FQLY+SG +T  +C  +   L+H V AVGYG  +G + WIV+NSWG+ WGE GYI M  E N  G  T
Sbjct:  228 VSIDASSVQFQLYKSGAYTDTQCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGEKGYINMVIEGNTCGVAT 304          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.781e-12
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = -2
Query:  603 FQLYESGIFTGR-CGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 821
            F+ Y+ G+FT   CG +   ++H V AVGYG E+   YW++KNSWG  WG+ GY +ME          CG+A  +SY
Sbjct:  283 FRFYKKGVFTSNTCGNTPMDVNHAVLAVGYGVEDDVPYWLIKNSWGGEWGDNGYFKMEMG-----KNMCGVATCSSY 354          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.938e-12
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = -2
Query:  603 PGSVAIEGGGMAFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 857
            P SV+I+    +FQ Y  G++    C   +++H V  VGYGT+ G+ +WI+KNSWG SWG  GY  + RN        CGI   AS+
Sbjct:  244 PISVSIDASLASFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQKGSKHWIIKNSWGESWGNKGYALLARN----KNNACGITNMASF 326          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.449e-12
Identity = 44/98 (44.90%), Postives = 56/98 (57.14%), Query Frame = -2
Query:  603 KAVAN-HPGSVAIEGGGMAFQLYESGIF-TGRCG-TSLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            KAVA   P SVA++    +FQ Y+SGI+   +C    L+H V  VGYG E    +G  YW+VKNSWG  WG  GYI+    +A      CGIA  A+Y
Sbjct:  237 KAVAKVGPISVAVDASHDSFQFYDSGIYYEPQCKRVHLNHAVLVVGYGFEGEESDGNSYWLVKNSWGEEWGMKGYIK----IAKDWNNHCGIATLATY 330          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: LMCPB_LEIME (Cysteine proteinase B OS=Leishmania mexicana GN=LMCPB PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.449e-12
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = -2
Query:  639 GSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTL 854
            G +AI     +F  Y+SG+ T   G  L+HGV  VGY       YW++KNSWG  WGE GY+R+   V   L
Sbjct:  259 GPIAIALDASSFMSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNACL 330          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVN (Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.449e-12
Identity = 45/119 (37.82%), Postives = 55/119 (46.22%), Query Frame = -2
Query:  603 NHPGSVAIE-GGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGT-----------------------EN--GAD------YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 863
            N+ G V I  G    F LY  G+F G C   L+H V  VGYG                        EN  G D      YWIV+NSWG +WGE GYIR++RN AG   G CG+  +  +
Sbjct:  386 NYVGPVTIAVGASEDFVLYSGGVFDGECNPELNHSVLLVGYGQVKKSLAFEDSHSNVDSNLIKKYKENIKGDDDDDIIYYWIVRNSWGPNWGEGGYIRIKRNKAGD-DGFCGVGSDVFF 503          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.449e-12
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = -2
Query:  639 GSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTL 854
            G +AI     +F  Y+SG+ T   G  L+HGV  VGY       YW++KNSWG  WGE GY+R+   V   L
Sbjct:  260 GPIAIALDASSFMSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNACL 331          
The following BLAST results are available for this feature:
BLAST of CB290544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
ACP1_ENTHI1.697e-1238.89Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
CATL1_RAT2.895e-1245.92Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
CATH_RAT2.895e-1245.45Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CPP1_ENTHI3.781e-1248.05Cysteine proteinase 1 OS=Entamoeba histolytica GN=... [more]
ALEUL_ARATH3.781e-1242.86Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CATK_MOUSE4.938e-1241.38Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
TEST2_MOUSE6.449e-1244.90Testin-2 OS=Mus musculus PE=2 SV=1[more]
LMCPB_LEIME6.449e-1243.06Cysteine proteinase B OS=Leishmania mexicana GN=LM... [more]
CYSP_PLAVN6.449e-1237.82Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=... [more]
CYSP2_LEIPI6.449e-1243.06Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290544 ID=CB290544; Name=CB290544; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTTAGATAACAACAATTTGTTTGTGCATTGCCCTTT
ATTCAACGCAGATAGATAACTTACAACGCTATATACCCAACCAACGTCCG
AATAAATATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAAT
GAAATGCAGTAGAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCAC
GAATATTTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACT
ATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGT
TTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCT
CATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGC
AGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCAT
CCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTT
GCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTG
GAGATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATG
GGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGC
CACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAGCTACTGCCCC
ATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGTGCCATATCCA
ACAGCAGTAACACCATGGTCCAGAGATGTCCCACATCTTCCCGTAAATAT
ACCCGATTCATATAACTGGAATGCCATGCCACCTCCTTCAATGGCAACAC
TCCCGGGGTGATTTGCAACTGCCTTT
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