CB290592

Overview
NameCB290592
Unique NameCB290592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.028e-19
Identity = 68/229 (29.69%), Postives = 120/229 (52.40%), Query Frame = 2
Query:  194 PVVDLKEVRFQRAEAVSGVLK-AAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEP--LDPQELPFVCRDITLEYSGQVHKLGTLLFELISEALGLKPDCLLN-MECAKGHCL---LSNYYPACPQPELTMGTTKHSDPDFLTILLQDH-MGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISN 856
            P+++L+ +     +A   ++K A E  GFF+++NHG+  EV+  + +  +G ++   +  E+ +   V  K   G      E +  +W  T F    P     +  +L    R++  +++ ++ KL   L +L+ E LGL+   L      +KG      +SNY P CP+P+L  G   H+D   + +L QD  + GLQ+   +QWIDVPP+  + V+N+GD L++I+N
Sbjct:    5 PIINLENLCGAERDATMEMIKDACENWGFFELVNHGIPHEVMDTVEKFTKGHYK---KCMEQRFKELVASK---GLEAVQAEVTDLDWESTFFLRHLPVSNISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNY-PPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVITN 226          
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.260e-19
Identity = 72/244 (29.51%), Postives = 112/244 (45.90%), Query Frame = 2
Query:  191 IPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVN-------------RKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSGQVHKLGTLLFELISEALGLKPDCL--------LNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQVFHQNQ-WIDVPPLSGAFVVNIGDLLQLISN 856
            IPV+DL        +  + +  A++  G FQ+ NHG++ ++L  +   ++   ++P E K E  S +                K  +   F + + S  N  +TL+         P +    C  I  EY  ++ KL + L   I  +LG+  + +           +  +G   L N+YP CP+PE  MG   H+D   LTIL Q + GGLQVF +   W+ V P  G  VVNIGDL  ++SN
Sbjct:   49 IPVIDLSN-----PDVTTLIGDASKTWGAFQIANHGISQKLLDDIESLSKTLFDMPSERKLEAASSDKGVSGYGEPRISPFFEKKMWSEGFTIADDSYRNHFNTLW---------PHDHTKYC-GIIQEYVDEMEKLASRLLYCILGSLGVTVEDIEWAHKLEKSGSKVGRGAIRL-NHYPVCPEPERAMGLAAHTDSTILTILHQSNTGGLQVFREESGWVTVEPAPGVLVVNIGDLFHILSN 276          
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.260e-19
Identity = 71/229 (31.00%), Postives = 115/229 (50.22%), Query Frame = 2
Query:  194 PVVDLKEVRFQ-RAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQ--ELPFVCRDITLEYSGQVHKLGTLLFELISEALGLKPDCLLN-MECAKGHCL---LSNYYPACPQPELTMGTTKHSDPDFLTILLQDH-MGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISN 856
            P+++L+ +    RA+ +  +  A +  GFF+++NHG+  E L  + +  R  ++   +  EE +   V  K   G      E +  +W  T F    PE    Q  +L    + I  E++ ++  L   L +L+ E LGL+   L      +KG      +SNY P CP+P+L  G   H+D   + +L QD  + GLQ+     WIDVPP+  A VVN+GD L++I+N
Sbjct:    5 PIINLENINDDGRAKILEQIEDACQNWGFFELVNHGIPHEFLDMVEKMTRDHYK---KCMEERFKETVLSK---GLEAAQAEVNDMDWESTFFLRHLPESNISQMSDLDEEYKKIMKEFAKKLENLAEELLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNY-PPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGNWIDVPPMRHAIVVNLGDQLEVITN 226          
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.870e-19
Identity = 74/270 (27.41%), Postives = 124/270 (45.93%), Query Frame = 2
Query:   74 VKGLVDAGITKVPGIFIRSSEELDRHRQNSNEPTRTHFRIPVVDLKEVRFQR--AEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQEL------PFVCRDITLEYSGQVHKLGTLLFELISEALGLKPDCLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQ-DHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISN 856
            V+ L    +  +P  ++R   E D        P      IPV+DL  +  Q+   + ++    A  + GFFQ+INHGV  EV+  M      F  LP + K  Y     N    YG  F   E    +W D  F +   +P+  + +      P   R+   +YS ++ K+   L  ++++ LGL+ + +L               P+       +G + HSD   LT+L+Q + + GL +    +W+ + P+ GAFVVNIGD+++++SN
Sbjct:   17 VQVLAGKELKNLPNRYVRPELEHD-----DVVPIDNSLEIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLP-NGMEGYGQAFVTSEEQKLDWADMHFLIT--KPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESE-ILTKPLRTVFNREDELLPSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSN 277          
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.531e-18
Identity = 76/242 (31.40%), Postives = 106/242 (43.80%), Query Frame = 2
Query:  170 PTRTHFRIPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGP----EPLDPQELPFVCRDITLEYSGQVHKLGTLLFELISEALGLKPDCL--------LNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQVFHQN-QWIDVPPLSGAFVVNIGDLLQLISN 856
            P  T   IP++DL        +A + +  A    G FQ+ NHGV   +L  +         LPV+ K +    E      YG        +   W +       P      L PQ     C DI  EY   + KL + L  L   +LG+  + +        LN   A    L  N+YP CP+P+  MG   H+D   LTIL Q++  GLQVF  +  W+ VPP  G+ VVN+GDL  ++SN
Sbjct:   50 PPATGENIPLIDL-----DHPDATNQIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVS-GYGVARIASFFNKQMWSEGFTITGSPLNDFRKLWPQHHLNYC-DIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQA---ALQLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSN 281          
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.531e-18
Identity = 71/239 (29.71%), Postives = 115/239 (48.12%), Query Frame = 2
Query:  191 IPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFC----VMGPEPLDPQEL--PFVCRDITLEYSGQVHKLGTLLFELISEALGLKPDCLLNMECAKGH---CLLSNYYPACPQP-------ELTMGTTKHSDPDFLTILLQDHMGGLQV-FHQNQWIDVPPLSGAFVVNIGDLLQLISN 856
            IPV+D+ +      E+   ++KA E+ GFF+VINHGV+ E++  +      F  LP   K    ++       YG N  +  +    W + L        G  PL P  L  P   R+   EY+  V K+   + E I++ LG+KP   L+   +  +    L  N+YP CP         +  +G  +H+DP  +++L  ++  GLQ+  +   WI VPP   +F  N+GD LQ+++N
Sbjct:   18 IPVIDMSD-----PESKHALVKACEDFGFFKVINHGVSAELVSVLEHETVDFFSLPKSEK----TQVAGYPFGYG-NSKIGRNGDVGWVEYLLMNANHDSGSGPLFPSLLKSPGTFRNALEEYTTSVRKMTFDVLEKITDGLGIKPRNTLSKLVSDQNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTN 246          
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.531e-18
Identity = 68/234 (29.06%), Postives = 119/234 (50.85%), Query Frame = 2
Query:  182 HFRIPVVDL-KEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLY-ESSSANWRDTLFCVMGPEP--LDPQELPFVCRDITLEYSGQVHKLGTLLFELISEALGLKPDCLLNM-ECAKGHCL---LSNYYPACPQPELTMGTTKHSDPDFLTILLQDH-MGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISN 856
            + + PVVDL K +  +R + ++ +  A E  GFF+++NHG+  +++    +  +  +++ +E K        N  +K     +L  E    +W  T +    P+    D  ++    R    ++  ++  L   L +L+ E LGL+   L  +    KG      +SNY PACP+PE+  G   H+D   + +L QD  + GLQ+     WIDVPPL+ + V+N+GD L++I+N
Sbjct:    4 NIKFPVVDLSKLIGEERDQTMALINDACENWGFFEIVNHGLPHDLMDNAEKMTKEHYKISMEQK-------FNDMLKSKGLENLEREVEDVDWESTFYLRHLPQSNLYDIPDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNY-PACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITN 229          
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.999e-18
Identity = 67/240 (27.92%), Postives = 117/240 (48.75%), Query Frame = 2
Query:  158 NSNEPTRTHFRIPVVDLKEV----RFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVK-EEYYSREVNRKVKYGSNFDLYESSSANWR-DTLFCVMGPEPLDPQELPFVCRDITLEYSGQVHKLGTLLFELISEALGLKPDCLLNM-ECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISN 856
            N++    +  ++PV+DL  +      +R   V  ++ AA+E GFFQ++NHG+  +V   ML   +   + P  VK  E +S       ++G+      +S A +     F ++  E     +     R I   Y  ++ ++  ++ E++ + + +  +   N+ E       L+ Y+P+    E+  G   H+D  FLTIL QD +GGL++ +  QWI V P   A  VNIGD+ Q +SN
Sbjct:   29 NTSTIQTSGIKLPVIDLSHLTSGEEVKRKRCVKQMVAAAKEWGFFQIVNHGIPKDVFEMMLLEEKKLFDQPFSVKVRERFSDLSKNSYRWGNPS---ATSPAQYSVSEAFHIILSEVSRISDDRNNLRTIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENSFLRLNKYHPSVFGSEV-FGLVPHTDTSFLTILSQDQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSN 264          
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.611e-18
Identity = 67/232 (28.88%), Postives = 119/232 (51.29%), Query Frame = 2
Query:  194 PVVDLKEVRFQ-RAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVC---RDITLEYSGQVHKLGTLLFELISEALGLKPDCLLNMECAKGHCLLSNY------YPACPQPELTMGTTKHSDPDFLTILLQD-HMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISN 856
            PV++++++  Q RA  +  +  A E  GFF+++NH +  E+   M E  R   E   +  E+ +   +  KV+      + +++  +W  T F    P   +  E+P +    R +  E++ ++ KL   + +L+ E LGL+    L M  A     L  +      YP CP+PEL  G   H+D   L +L QD  + GLQ+    +W+DVPP++ + V+N+GD +++I+N
Sbjct:    5 PVINMEKLEGQERAATMKLINDACENWGFFELVNHSIPVEL---MDEVERLTKEHYKKCMEQRFKELMASKVEGA----VVDANDMDWESTFFIRHLPVS-NLSEIPDLTDEHRKVMKEFAEKLEKLAEQVLDLLCENLGLEKG-YLKMAFAGTTTGLPTFGTKVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVEVITN 227          
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.611e-18
Identity = 62/228 (27.19%), Postives = 116/228 (50.88%), Query Frame = 2
Query:  194 PVVDLKEVRFQRAEAVSGVLK-AAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEP--LDPQELPFVCRDITLEYSGQVHKLGTLLFELISEALGLKPDCLLN-MECAKGHCLLSNY--YPACPQPELTMGTTKHSDPDFLTILLQDH-MGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISN 856
            PV++++++  +   A  G++  A E  GFF+++NHG+  E++  +    +  ++   +  E+ +   V  K   G   ++   +  +W  T F    P+    +  +L    R +  +++ ++ KL   L +L+ E LGL+   L       KG    +    YP CP+ +L  G   H+D   + +L QD  + GLQ+   +QWIDVPP+  + V+N+GD L++I+N
Sbjct:    5 PVINMEKMNGEERAATMGLINDACENWGFFELVNHGIPPELMDTVERVTKAHYK---KCMEQRFKELVASKALEGIQAEV---TDMDWESTYFLRHLPQSNISEVPDLDEEYRRVMKDFAERLEKLAEYLLDLLCENLGLEKGYLKKAFYGTKGPNFGTKVANYPPCPKADLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMKHSIVINLGDQLEVITN 226          
The following BLAST results are available for this feature:
BLAST of CB290592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ACCO4_PETHY4.028e-1929.691-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
G3OX4_ARATH5.260e-1929.51Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
ACCO1_CUCME5.260e-1931.001-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
NCS1_COPJA6.870e-1927.41S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
G3OX1_ARATH1.531e-1831.40Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G2OX1_ARATH1.531e-1829.71Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
ACCO1_BRAJU1.531e-1829.061-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
G2OX7_ARATH1.999e-1827.92Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
ACCO_PERAE2.611e-1828.881-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO_DIOKA2.611e-1827.191-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290592 ID=CB290592; Name=CB290592; organism=Citrus sinensis; type=EST; length=857bp
GCACTTAGGTGAAGCTTCTTCCATAAATGAAAGATTTCAAGAACTGAAAG
CCTTTGATGAATCAAAAGCCGGTGTCAAAGGCCTAGTCGATGCTGGCATC
ACCAAGGTTCCAGGAATCTTCATCCGTTCATCAGAGGAGCTTGACAGACA
CCGCCAGAATTCCAACGAACCAACCAGAACCCACTTCAGAATTCCGGTCG
TCGACCTCAAAGAAGTTCGTTTCCAGAGAGCTGAAGCGGTCTCCGGAGTC
CTGAAGGCGGCAGAGGAGGTGGGATTCTTTCAGGTGATCAACCATGGGGT
GGCAACGGAAGTGCTGGTGGGGATGTTGGAGGCGGCGCGTGGCTTTCACG
AGCTTCCGGTGGAGGTCAAAGAGGAGTATTATAGTAGGGAAGTGAATAGG
AAGGTGAAGTATGGGAGTAACTTTGACTTGTATGAATCAAGTTCTGCTAA
TTGGAGGGATACTTTGTTTTGTGTTATGGGTCCTGAGCCTCTTGACCCTC
AGGAACTGCCTTTTGTTTGCAGGGATATTACACTGGAGTACTCTGGGCAA
GTCCATAAATTAGGGACACTGTTGTTTGAACTAATCTCTGAAGCACTTGG
GCTCAAGCCTGACTGCCTCTTGAACATGGAATGTGCAAAAGGGCATTGTC
TTTTGAGTAACTACTACCCAGCATGCCCCCAGCCTGAACTTACTATGGGC
ACTACCAAGCACTCCGACCCTGATTTCCTAACCATCCTTCTTCAAGACCA
TATGGGGGGACTTCAGGTTTTCCATCAAAATCAGTGGATTGATGTTCCTC
CTTTGTCCGGAGCGTTTGTTGTAAATATTGGGGATCTTTTGCAGCTTATA
TCTAATG
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