CB290592

Overview
NameCB290592
Unique NameCB290592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.444e-16
Identity = 66/232 (28.45%), Postives = 106/232 (45.69%), Query Frame = 2
Query:  191 IPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGP----EPLDPQELPFVCRDITLEYSGQVHKLGTLLFELISEALGLKPDCLL----NMECAKGHCLLS-NYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQVFHQN-QWIDVPPLSGAFVVNIGDLLQLISN 856
            +P++DL ++        + V  A    G FQ+ NHGV + +L  +         LPV+ K +  +R  N    YG        +   W +    +  P      L P      C +I  EY   + KL   L      +LG++   +     N +      ++  N+YP CP+P+  MG   H+D   +TIL Q++  GLQVF  +  W+  PP+ G+ VVN+GDLL +++N
Sbjct:   50 LPLIDLSDIH-----VATLVGHACTTWGAFQITNHGVPSRLLDDIEFLTGSLFRLPVQRKLKA-ARSENGVSGYGVARIASFFNKKMWSEGFTVIGSPLHDFRKLWPSHHLKYC-EIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNNTAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTN 274          
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 75/268 (27.99%), Postives = 112/268 (41.79%), Query Frame = 2
Query:  107 VPGIFIRSSEELDRHRQNSNEPTRTHFRIPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEP------LDPQELPFVCRDITLEYSGQVHKLGTLLFELISEALGLK--------PDCLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQV----FHQNQWIDVPPLSGAFVVNIGDLLQLISN 856
            +P  F  +    D H  +  EP  T   IPV+ L        E    + +A EE G F + +HGV+  +L  +    +    LP+  ++    R  +    YG            W +  F VMG         L P +    C ++  EY   +  L   L  ++  +LGL         PD   +   +    L  N YP CP P L MG   H+D   LTIL Q ++ GL++       ++WI V P+ G+ VV +GDL  +ISN
Sbjct:   19 IPLDFTNTKTLPDSHVWSKPEPETTSGPIPVISLSN-----PEEHGLLRQACEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMH-RKILAVRSPDESTGYGVVRISMFYDKLMWSEG-FSVMGSSLRRHATLLWPDDHAEFC-NVMEEYQKAMDDLSHRLISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISN 278          
BLAST of CB290592 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 73/244 (29.92%), Postives = 103/244 (42.21%), Query Frame = 2
Query:  191 IPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGM-LEAARGFHELPVEVKEEYYSREVNRKVK-YGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSGQVHKLGTLLFELISEALGLKPDCLLNMECAKGH---CLLSNYYPACPQPEL----------------TMGTTKHSDPDFLTILLQDHMGGLQV-FHQNQWIDVPPLSGAFVVNIGDLLQLISN 856
            IP +DL   R Q +E V   +KA EE GFF+V+NH V  EV+  +  E    F +   E ++   S       K  G N D  E            +        ++ P     I  +Y   V  L   + EL +E L +     L+      H    L  N+YP  P  +L                 +G  +HSDP  LTIL  +++GGLQ+  H   WI VPP    F V +GD LQ+++N
Sbjct:   20 IPTIDLSLERSQLSELV---VKACEEYGFFKVVNHSVPKEVISRLDEEGIEFFSKNSSEKRQAGTSTPFGYGCKNIGPNGDKGELEYLLLHSNPISISERSKTIAKDHPIKFSCIVNDYIKAVKDLTCEILELAAEGLWVPDKSSLSKIIKDEHSDSLLRINHYP--PVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTILRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTN 258          
The following BLAST results are available for this feature:
BLAST of CB290592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
G3OX2_ARATH2.444e-1628.45Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G3OX3_ARATH6.654e-1427.99Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX2_PEA5.633e-1329.92Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290592 ID=CB290592; Name=CB290592; organism=Citrus sinensis; type=EST; length=857bp
GCACTTAGGTGAAGCTTCTTCCATAAATGAAAGATTTCAAGAACTGAAAG
CCTTTGATGAATCAAAAGCCGGTGTCAAAGGCCTAGTCGATGCTGGCATC
ACCAAGGTTCCAGGAATCTTCATCCGTTCATCAGAGGAGCTTGACAGACA
CCGCCAGAATTCCAACGAACCAACCAGAACCCACTTCAGAATTCCGGTCG
TCGACCTCAAAGAAGTTCGTTTCCAGAGAGCTGAAGCGGTCTCCGGAGTC
CTGAAGGCGGCAGAGGAGGTGGGATTCTTTCAGGTGATCAACCATGGGGT
GGCAACGGAAGTGCTGGTGGGGATGTTGGAGGCGGCGCGTGGCTTTCACG
AGCTTCCGGTGGAGGTCAAAGAGGAGTATTATAGTAGGGAAGTGAATAGG
AAGGTGAAGTATGGGAGTAACTTTGACTTGTATGAATCAAGTTCTGCTAA
TTGGAGGGATACTTTGTTTTGTGTTATGGGTCCTGAGCCTCTTGACCCTC
AGGAACTGCCTTTTGTTTGCAGGGATATTACACTGGAGTACTCTGGGCAA
GTCCATAAATTAGGGACACTGTTGTTTGAACTAATCTCTGAAGCACTTGG
GCTCAAGCCTGACTGCCTCTTGAACATGGAATGTGCAAAAGGGCATTGTC
TTTTGAGTAACTACTACCCAGCATGCCCCCAGCCTGAACTTACTATGGGC
ACTACCAAGCACTCCGACCCTGATTTCCTAACCATCCTTCTTCAAGACCA
TATGGGGGGACTTCAGGTTTTCCATCAAAATCAGTGGATTGATGTTCCTC
CTTTGTCCGGAGCGTTTGTTGTAAATATTGGGGATCTTTTGCAGCTTATA
TCTAATG
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