CB290594

Overview
NameCB290594
Unique NameCB290594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.383e-58
Identity = 107/154 (69.48%), Postives = 136/154 (88.31%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMY 694
            N+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEYANN++R+TI+RYKKAC+DS+N  ++ E N  +YQQE+ KLR+QI+ IQN NR+++G++LS+L+ KELK +E RLEK I R+RSKK+E+LL EIE  +KREI+L N+N+Y
Sbjct:   13 NSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIY 166          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 4.651e-54
Identity = 108/156 (69.23%), Postives = 133/156 (85.26%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGS-ITEANTQ-FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNM 691
            NTT+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NN+ V+ATIDRYKKA A  S  G+ + E N Q +YQQE+ KLR QI+ +QN N+H++G+ +S L+ KELK LE+RLEKGI ++R++KNE+L +EI +M KREI+LQNDNM
Sbjct:   13 NTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNM 168          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.937e-53
Identity = 100/156 (64.10%), Postives = 131/156 (83.97%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANT-QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMY 694
            N T+RQVTFCKRRNGLLKKAYEL++LCDAE+ALIVFSSRGRLYE++N NS R+TI+RYKKA A +S    + + N+ Q++QQEA K+R QI+ +QN NRH++GE++  +  KELK+LE RLEKGI R+RSKK+E+L +EIE+M+KRE  LQN+NM+
Sbjct:   13 NKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMF 168          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.982e-34
Identity = 75/152 (49.34%), Postives = 104/152 (68.42%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  + +TI+RY + C + S   +  E  TQ + QE TKL+ +   +   NR++LGE L  +  KEL+ LE +LE  +   R +K ++++ E+E + K+E QL + N
Sbjct:   13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNR-CYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDIN 163          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.191e-33
Identity = 70/152 (46.05%), Postives = 104/152 (68.42%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  +  T++RY+  C ++ +  +   + TQ +  E +KL+ +   +Q   RH+LGE L  L+ KEL+ LE +LE  + + R +K ++++ ++E + ++E QL   N
Sbjct:   13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNAL-SETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEIN 163          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.911e-33
Identity = 71/153 (46.41%), Postives = 108/153 (70.59%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNM 691
            N+T+RQVTF KRRNG+ KKA EL++LCDAEV L++FSS GRLYEY++ S+++ IDRY K+  D     +   +  +F+Q+EA  LR+Q+  +Q  +R ++GE LS LN KEL++LE +LE  +  VR+KK+ +L+ EI  + ++   +  +NM
Sbjct:   13 NSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKS-KDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENM 164          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.720e-32
Identity = 66/152 (43.42%), Postives = 108/152 (71.05%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEV+LI+FS +G+LYE+A+++++ TIDRY +   D  +   ++E N Q  + EA  + ++I +++   R +LGE + T + +EL+ +E +LEK +  +R++K ++   +IE ++++E  L  +N
Sbjct:   13 NATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAEN 164          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.720e-32
Identity = 67/149 (44.97%), Postives = 102/149 (68.46%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGS-ITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQL 676
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  +  T+++Y   C ++    S +     Q + QE ++L+ ++  +Q   RH+LGE L  L+ KEL+ LE +LE  + + R +K ++++ +++ + ++E QL
Sbjct:   13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQL 161          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.236e-31
Identity = 67/152 (44.08%), Postives = 106/152 (69.74%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVAL++FS R +LYE++++S+ ATI+RY++   +  N     + N+Q  + E + L ++I +++   R +LGE +   + +EL+ LE +L++ + R+R+KK ++L  EIE ++  E  L  +N
Sbjct:   13 NATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKEIGNNHKRND-NSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKEN 163          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RGRLYE+A+  S++ TIDRYK    D  N  +I + + Q  + +   L +++  +    R ILGE L   + +EL+ LE +LEK + ++R KK E+L  +I  ++++E  L  DN
Sbjct:   13 NPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTI-QQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDN 164          
The following BLAST results are available for this feature:
BLAST of CB290594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL11_ARATH2.383e-5869.48Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MAD13_ORYSJ4.651e-5469.23MADS-box transcription factor 13 OS=Oryza sativa s... [more]
MAD21_ORYSJ3.937e-5364.10MADS-box transcription factor 21 OS=Oryza sativa s... [more]
AGL6_ARATH6.982e-3449.34Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
MADS6_ORYSJ1.191e-3346.05MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD27_ORYSJ5.911e-3346.41MADS-box transcription factor 27 OS=Oryza sativa s... [more]
SOC1_ARATH1.720e-3243.42MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD17_ORYSJ1.720e-3244.97MADS-box transcription factor 17 OS=Oryza sativa s... [more]
AGL19_ARATH4.236e-3144.08Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MAD56_ORYSJ1.233e-3049.02MADS-box transcription factor 56 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290594 ID=CB290594; Name=CB290594; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTCTCTTCTTCTTTGTGTGTTTGTGTGTGTTTATA
TGTATATATGTGTCTAGATAGATAGATAGATAGATATATTTTTTTCTTTT
TTCTTTTTTGTCTTTTTCAGGTGTAGCTCAAGCAAGTTACCAGCAACCAT
GGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAG
GAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAA
GTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACT
GTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTG
GCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGG
TACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGC
TAACACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCC
GGGAGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACT
TTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAAT
CGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGT
TCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCT
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