CB290594

Overview
NameCB290594
Unique NameCB290594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 71/156 (45.51%), Postives = 103/156 (66.03%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATI----DRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRR+GLLKKA E+SVLCDAEVALI+FS++G+LYEYA +S    I    +RY  A     +  S T+ N   +  E  KL+ ++  IQ   +H++GE L +LN KEL+ LE +LE  +  +RS+K++++L  I  ++++E  LQ +N
Sbjct:   13 NKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGN---WCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEEN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 70/153 (45.75%), Postives = 102/153 (66.67%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRR  LLKKAYELSVLCDAEVALI+FS+RG+LYE+ ++ S+  T+++Y+K C   S   +I    TQ  QQE  KL+ ++  +Q   R++LGE L  L  KEL+ LE +L+  + ++RS + + +L ++  +++RE  L   N
Sbjct:   13 NKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQK-CNFGSPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEAN 164          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29
Identity = 71/151 (47.02%), Postives = 104/151 (68.87%), Query Frame = 2
Query:  242 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPG-SITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T++RY+K    +  P  S  EA     QQE  KL+ +   +Q   R++LGE L  LN KEL++LE +L+  + ++RS + +++L ++   +++E  L   N
Sbjct:   16 NRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEAN 166          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 72/156 (46.15%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS----VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRRNGLLKKA+E+SVLCDAEVA IVFS +G+LYEYA +S    +    +RY  A     +  S +E N   +  E  KL+ +I  IQ  ++H++GE L +LN KEL+ LE +LE  +  + S+K+ ++L  I  ++K+E  LQ +N
Sbjct:   13 NKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGN---WCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEEN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 72/155 (46.45%), Postives = 105/155 (67.74%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKA--CADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  +RQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RGRL+E++ +S +  T++RY+      +S    +  E     Y QE  KL+ ++  +Q   R++LGE L  L+ KEL+ LE ++E  +  +RS KN+ LL ++  ++++E QLQ+ N
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNY-QEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDAN 166          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 72/155 (46.45%), Postives = 105/155 (67.74%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKA--CADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  +RQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RGRL+E++ +S +  T++RY+      +S    +  E     Y QE  KL+ ++  +Q   R++LGE L  L+ KEL+ LE ++E  +  +RS KN+ LL ++  ++++E QLQ+ N
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNY-QEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDAN 166          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 70/161 (43.48%), Postives = 105/161 (65.22%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK--------ACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EYAN+S +   ++RY++           D ++PGS T         E  KL+ ++  +Q   +H +GE L +LN KEL+NLE +L+  +  +RS+KN+++   I  ++K++  LQ  N
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWT--------LEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 70/153 (45.75%), Postives = 99/153 (64.71%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ ++S +  T+DRY+K    S    +      +   +E  KL+ +   +Q   R++LGE L  LN KEL+ LE +L+  + +VRS K + +L ++  ++ +E  L   N
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 69/155 (44.52%), Postives = 100/155 (64.52%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEAN--TQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +  S+  T++RY+K      +     + N   Q  + E  KL+ ++  +Q   R++LGE L TL  KEL+ LE +L+  +  +RS + + +L ++  +++RE  L   N
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEAN 167          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 64/152 (42.11%), Postives = 105/152 (69.08%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RG+LYE+A+ S + TI+RY+    ++    ++ + + +  + +A  L +++  ++   R +LGE L   + +EL +LE +LE+ +  +R +K ++L  ++  + ++E++L+ DN
Sbjct:   13 NPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKENIGNKTV-QQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDN 163          
The following BLAST results are available for this feature:
BLAST of CB290594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD14_ORYSJ7.989e-3045.51MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL9_ARADE7.989e-3045.75Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL9_SOLLC1.043e-2947.02Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MAD15_ORYSJ1.780e-2946.15MADS-box transcription factor 15 OS=Oryza sativa s... [more]
MADS5_ORYSJ2.324e-2946.45MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI2.324e-2946.45MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AGL8_SOLTU2.324e-2943.48Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
SEP1_ARATH3.965e-2945.75Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MADS8_ORYSJ3.965e-2944.52MADS-box transcription factor 8 OS=Oryza sativa su... [more]
MAD50_ORYSJ3.965e-2942.11MADS-box transcription factor 50 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290594 ID=CB290594; Name=CB290594; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTCTCTTCTTCTTTGTGTGTTTGTGTGTGTTTATA
TGTATATATGTGTCTAGATAGATAGATAGATAGATATATTTTTTTCTTTT
TTCTTTTTTGTCTTTTTCAGGTGTAGCTCAAGCAAGTTACCAGCAACCAT
GGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAG
GAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAA
GTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACT
GTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTG
GCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGG
TACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGC
TAACACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCC
GGGAGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACT
TTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAAT
CGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGT
TCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCT
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