CB290594

Overview
NameCB290594
Unique NameCB290594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 61/146 (41.78%), Postives = 103/146 (70.55%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREI 670
            N T+RQVTF KRR+GL KKA ELS+LCDAEV L+VFSS  RLY++A++S+++ I+RY +   D     +   +  + +QQEA  LR+Q+  +Q  +R +LG+ LS L+ ++L+NLE++LE  +  +R +K+ +++ +I+ + ++ +
Sbjct:   13 NATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKEDPHQTMN-ASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRKVV 157          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.154e-28
Identity = 63/156 (40.38%), Postives = 107/156 (68.59%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSS---NPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNM 691
            ++T+RQVTF KRR GL+KKA EL++LCDAEV LI+FSS G+LY++A++S+++ IDRY K+  +     NP S      +F+Q+EA  LR+++  +Q  +R ++GE L+ L+  EL +LE ++E  +  +R +K ++L  EI+ + ++   +  +N+
Sbjct:   13 DSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPAS----EVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENL 164          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 64/155 (41.29%), Postives = 107/155 (69.03%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSS---NPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            NT NRQVTF KRR GL+KKA EL++LCDA+V LIVFS  GRLY+++++S+++ I+RY++A  +     NP S      +F+Q+E T LR+Q++ + + NR +LGE +S    ++L+ L+ ++E  +  +R+KK+++L  EI  + ++   +Q +N
Sbjct:   13 NTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPMS----EAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKEN 163          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.570e-28
Identity = 67/150 (44.67%), Postives = 102/150 (68.00%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQFY----QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKRE 667
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALIVFS+RG+LYE+ + +S+  T++RY+K C   +  G++T           QQE  KL+ +   +Q   R+++GE L  L+ K+L+ LE +L+  + ++RS + + +L ++  ++++E
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQK-CNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKE 161          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.570e-28
Identity = 64/153 (41.83%), Postives = 100/153 (65.36%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EYAN+S +   ++RY++              +   +  E  KL+ ++  +Q   +H +GE L +L+ KEL+NLE +L+  +  +RS+KN+++   I  ++K++  LQ  N
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.570e-28
Identity = 67/153 (43.79%), Postives = 105/153 (68.63%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+ +++S+  T++RY+K   D  +     + N+Q  + E   L R+I  ++   R ++GE L   + +EL+ LE +L++ + ++R+KK ++L  E E ++++E  L  +N
Sbjct:   13 NATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRND-NSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAEN 164          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 68/156 (43.59%), Postives = 103/156 (66.03%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKK---ACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T++RY+K      + + P     A     QQE  KL+ +   +Q   R++LGE L  L+ KEL++LE +L+  + ++R+ + + +L ++  ++ +E  L   N
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETN 168          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 64/154 (41.56%), Postives = 103/154 (66.88%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRRNGLLKKAYELSVLCDAE+AL++FS+RG+LYE+ +  + +  T+D+Y+K    + +P   +  + Q   Q+  KL+ ++  +Q+  RH+LGE LS ++  EL++LE +++  + ++RS K   +L ++  ++ +E  L   N
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQ-SAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 66/152 (43.42%), Postives = 103/152 (67.76%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N   RQVTF KR++GLLKKAYELSVLCDAEV+LI+FS+ G+LYE++N  V  TI+RY + C D+       E +TQ  +QE TKL+ +   +   +R+++GE L  ++ KEL+ LE +LE  +   R +K ++++ ++E + ++E +L + N
Sbjct:   13 NKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYR-CKDNLLDNDTLE-DTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDIN 162          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 5.725e-28
Identity = 66/156 (42.31%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS----VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRR GLLKKA E+SVLCDAEV+LIVFS +G+L+EY++ S    V    +RY  A      P S   A T  +  E ++L+ +I  ++   RH LGE L  ++ K+L+NLE +LE  +  +RS+KN+++   +  ++++E ++Q +N
Sbjct:   13 NKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTN-WSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEEN 167          
The following BLAST results are available for this feature:
BLAST of CB290594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD23_ORYSJ3.965e-2941.78MADS-box transcription factor 23 OS=Oryza sativa s... [more]
AGL21_ARATH1.154e-2840.38Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
MAD25_ORYSJ1.968e-2841.29MADS-box transcription factor 25 OS=Oryza sativa s... [more]
MTF1_PEA2.570e-2844.67MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL8_SOLLC2.570e-2841.83Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL14_ARATH2.570e-2843.79Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
SEP3_ARATH3.356e-2843.59Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL3_ARATH3.356e-2841.56Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
AGL13_ARATH3.356e-2843.42Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
CAL_ARATH5.725e-2842.31Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290594 ID=CB290594; Name=CB290594; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTCTCTTCTTCTTTGTGTGTTTGTGTGTGTTTATA
TGTATATATGTGTCTAGATAGATAGATAGATAGATATATTTTTTTCTTTT
TTCTTTTTTGTCTTTTTCAGGTGTAGCTCAAGCAAGTTACCAGCAACCAT
GGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAG
GAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAA
GTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACT
GTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTG
GCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGG
TACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGC
TAACACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCC
GGGAGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACT
TTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAAT
CGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGT
TCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCT
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