CB290594

Overview
NameCB290594
Unique NameCB290594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 65/153 (42.48%), Postives = 104/153 (67.97%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  +RQVTF KRRNGLLKKAYELS+LCDAEVAL++FS  GRLY+++++S +  T++RY++    S +  + T    Q   QE   L+  +  +Q   R++LGE L+ L   EL+ LE+++ + + ++RS+K ++LL E+  ++++E  LQ+ N
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDAN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 68/156 (43.59%), Postives = 102/156 (65.38%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKK---ACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T++RY+K      + + P     A     QQE  KL+ +   +Q   R++LGE L  L+ KEL+ LE +L+  + ++R+ + + +L ++  ++ +E  L   N
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETN 168          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 62/156 (39.74%), Postives = 107/156 (68.59%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSS---NPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNM 691
            ++T+RQVTF KRR GL+KKA EL++LCDAEV LI+FS+  +LY++A++SV++TI+R+  A  +     NP S      +F+Q+EA  LR+++  +Q   R + G  L+ L+ KEL+N+E++LE  +  +R K+ ++L  EI+ + ++   + ++N+
Sbjct:   13 DSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSSVKSTIERFNTAKMEEQELMNPAS----EVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENL 164          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27
Identity = 68/153 (44.44%), Postives = 98/153 (64.05%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRRNGLLKKAYELSVLCDAEV+LIVFS+RG+LYE+ + S +  T++RY+K    S    +      +   +E  KL+ +   +Q   R++LGE L  LN KEL+ LE +L+  + +VR  K + +L ++  ++ +E  L + N
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDAN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27
Identity = 64/156 (41.03%), Postives = 104/156 (66.67%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQ---FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +  S+  T+++Y+K C+ +    ++    ++     + E  KL+ ++  +Q   R++LGE L +L  KEL++LE +L+  +  VR+ + + L+ ++  ++++E  +   N
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQK-CSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEAN 167          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27
Identity = 64/156 (41.03%), Postives = 104/156 (66.67%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQ---FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +  S+  T+++Y+K C+ +    ++    ++     + E  KL+ ++  +Q   R++LGE L +L  KEL++LE +L+  +  VR+ + + L+ ++  ++++E  +   N
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQK-CSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEAN 167          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27
Identity = 68/161 (42.24%), Postives = 102/161 (63.35%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK--------ACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EYA +S +   ++RY++           D ++PGS T  N         KL+ ++  +Q   +  +GE L +LN KEL+NLE +L   +  +RS+KN+++   I  ++K++  LQ  N
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLEN--------AKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27
Identity = 63/153 (41.18%), Postives = 101/153 (66.01%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFSS+G+L+EY+ +S +   ++RY +             + ++ +  E  KL+ ++  ++   R+ +GE L +L+ KEL++LE +L+  I  +RS+KN+ +   I  ++K++  LQ+ N
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 64/154 (41.56%), Postives = 103/154 (66.88%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK-ACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRR GLLKKA+E+SVLCDAEVAL+VFS +G+L+EY+ +S +   ++RY++ + A+       ++ NT  +  E  +L+ +I  ++   RH LGE L  ++ KEL+NLE +L+  +  +R++KN+++   I  ++K+E  +Q  N
Sbjct:   13 NKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTN-WSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 64/154 (41.56%), Postives = 103/154 (66.88%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK-ACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRR GLLKKA+E+SVLCDAEVAL+VFS +G+L+EY+ +S +   ++RY++ + A+       ++ NT  +  E  +L+ +I  ++   RH LGE L  ++ KEL+NLE +L+  +  +RS+KN+++   I  ++++E  +Q  N
Sbjct:   13 NKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTN-WSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQN 165          
The following BLAST results are available for this feature:
BLAST of CB290594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD34_ORYSJ9.766e-2842.48MADS-box transcription factor 34 OS=Oryza sativa s... [more]
AGL9_SINAL2.176e-2743.59Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL17_ARATH2.176e-2739.74Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
SEP2_ARATH3.711e-2744.44Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MADS7_ORYSJ3.711e-2741.03MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI3.711e-2741.03MADS-box transcription factor 7 OS=Oryza sativa su... [more]
AGL8_SOLCO3.711e-2742.24Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH3.711e-2741.18Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AP1_ARATH4.847e-2741.56Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AP1_SINAL6.330e-2741.56Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290594 ID=CB290594; Name=CB290594; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTCTCTTCTTCTTTGTGTGTTTGTGTGTGTTTATA
TGTATATATGTGTCTAGATAGATAGATAGATAGATATATTTTTTTCTTTT
TTCTTTTTTGTCTTTTTCAGGTGTAGCTCAAGCAAGTTACCAGCAACCAT
GGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAG
GAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAA
GTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACT
GTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTG
GCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGG
TACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGC
TAACACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCC
GGGAGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACT
TTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAAT
CGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGT
TCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCT
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