CB290594

Overview
NameCB290594
Unique NameCB290594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.842e-26
Identity = 61/153 (39.87%), Postives = 100/153 (65.36%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL++FSS+G+L+EY+ +S +   ++RY +             + ++ +  E  KL+ ++  ++   R+ +GE L +L+ KEL++LE +L   I  +RS+KN+ +   I  ++K++  LQ+ N
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 66/158 (41.77%), Postives = 102/158 (64.56%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKA---CADSSNPGSITEANTQFYQQEATKLRRQIREIQ-NLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N T+RQVTF KRR+GL+KK +ELSVLCDA++ LIVFS++G+L EY     S++  IDRY KA     +  N       N Q   +E T+++ +   +Q NL R+  G+ LST+ F+EL  LE  L++ + +VR++K E+L  ++E +++ E  L+ +N
Sbjct:   13 NNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVI-KELTRMKEETLNLQLNLQRY-KGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKEN 168          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 62/155 (40.00%), Postives = 98/155 (63.23%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIE--FMEKREIQLQNDNM 691
            N  +RQVTF KRR GLLKKA+ELSVLCDAEVA+IVFS  G+L+E+++ S++ T+ RY      S  PG   +   Q    E   L+ +I  +Q  + H+ G+ L+ L+ KEL++LE +L   +  VR +K  +L  ++E   ++++  +L+N+ +
Sbjct:   13 NANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETL 167          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 62/155 (40.00%), Postives = 98/155 (63.23%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLN---RHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N T RQVTF KRR GL KKA ELSVLCDA+VALI+FSS G+L+E+ ++S++  ++R+      S N   + + + +    E +   R  +EI + +   R + GE L  L+ +EL+ LE  LE G+ RV   K++ +++EI  ++K+ +QL ++N
Sbjct:   13 NATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHN---LQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDEN 164          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 61/154 (39.61%), Postives = 95/154 (61.69%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N T+RQVTF KRR GLLKK +ELSVLCDA++ LI+FSS+G+L+EY +  +S+   I RY +    S     + +   Q Y  E  K+RR    +Q   +   G+ LS   ++EL  LE +LE  + ++R++K E++  ++E ++K E  L+ +N
Sbjct:   16 NKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASL---PVEDNRVQLY-DEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKEN 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23
Identity = 60/155 (38.71%), Postives = 90/155 (58.06%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYK--KACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNM 691
            N   RQVTF KRR GL KKA ELS+LCDAEV L+VFS+ G+L+++A+ S+   IDRY         + P  +             +L+ ++ E     R + GE L  LN ++L+ LE  LE G+G V   K++ +L EI+ +E++ +QL  +N+
Sbjct:   32 NLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNSHSKTLQRAEPSQLDLQGED--SSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENL 184          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23
Identity = 61/155 (39.35%), Postives = 97/155 (62.58%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQE---ATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N+T RQVTF KRR GL KKA ELSVLCDA+VALI+FSS G+L++Y+++S++  ++R       S N   + + + +    E    ++L ++I E  +  R + GE L  LN +EL+ LE  LE G+ RV  +K + ++ EI  ++++ + L  +N
Sbjct:   13 NSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRD---LHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEEN 164          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.242e-23
Identity = 58/151 (38.41%), Postives = 97/151 (64.24%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNE---MLLAEIEFMEKREIQL 676
            N++NRQVT+ KRRNG+LKKA E+SVLCDA V++I+F+S G+++E+++ S+   +D+Y K          + +A  +    E  K+++    +Q   RH+ GE +++LN +EL  LE  LE G+  +R+K+NE   M+  + + ME+ + QL
Sbjct:   13 NSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTG-----RRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVLRMMRKKTQSMEEEQDQL 158          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.242e-23
Identity = 60/155 (38.71%), Postives = 97/155 (62.58%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIE--FMEKREIQLQNDNM 691
            N  +RQVTF KRR+GLLKKA ELSVLCDAEVA+IVFS  G+L+EY++  ++ T+ RY        N  S + +  +    E   L+ Q+ ++Q  +  + G+ L+ L FKEL++LE +L   +  VR +K  +L  ++E   ++++  +L+N+ +
Sbjct:   13 NANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLSRY-------GNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETL 160          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.459e-23
Identity = 62/162 (38.27%), Postives = 91/162 (56.17%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSNPGSITEANTQFYQ-------QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMY 694
            N  +RQVTFCKRR GLLKKA ELSVLCDAE+ +++FS +G+L+E A   ++   ID+Y K         S T    +  Q        E   L+++I  +Q    ++ G     +N +EL  LE  LE  I ++RS K +++L EI+ +  +E  L+N N Y
Sbjct:   13 NPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKY 174          
The following BLAST results are available for this feature:
BLAST of CB290594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL8_SINAL1.842e-2639.87Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
DEF21_ANTMA3.840e-2441.77MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
AGL15_BRANA3.840e-2440.00Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
SVP_ARATH5.016e-2440.00MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
FBP24_PETHY1.117e-2339.61MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD47_ORYSJ1.906e-2338.71MADS-box transcription factor 47 OS=Oryza sativa s... [more]
JOIN_SOLLC1.906e-2339.35MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
FBP1_PETHY7.242e-2338.41Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
AGL15_ARATH7.242e-2338.71Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
AGL12_ARATH9.459e-2338.27Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290594 ID=CB290594; Name=CB290594; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTCTCTTCTTCTTTGTGTGTTTGTGTGTGTTTATA
TGTATATATGTGTCTAGATAGATAGATAGATAGATATATTTTTTTCTTTT
TTCTTTTTTGTCTTTTTCAGGTGTAGCTCAAGCAAGTTACCAGCAACCAT
GGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAG
GAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAA
GTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACT
GTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTG
GCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGG
TACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGC
TAACACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCC
GGGAGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACT
TTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAAT
CGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGT
TCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCT
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