CB290594

Overview
NameCB290594
Unique NameCB290594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 56/156 (35.90%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMY 694
            N+TNRQVTF KRR GLLKKA EL+VLCDA V +++FSS G+++EY +   S+R  I++Y+ A    +N       + Q    E T+++ ++ +++   R   G+ LS+L   ++ +LE +LE  + +VR++K+++L  +++ + ++E  L++ N +
Sbjct:   13 NSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHA----TNSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTF 164          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.752e-22
Identity = 62/151 (41.06%), Postives = 88/151 (58.28%), Query Frame = 2
Query:  245 RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEA--TKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNM 691
            RQVTF KRR GL KKA ELSVLCDA+VALIVFSS G+L  +A++S+   ID+Y      S+N G   + +     + +    L  Q+ E     R + GE L  L+  EL+ LE  LE G+ RV   K++  + +I  ++++  QL  +NM
Sbjct:   17 RQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKYN---THSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENM 164          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22
Identity = 56/151 (37.09%), Postives = 97/151 (64.24%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNE---MLLAEIEFMEKREIQL 676
            N++NRQVT+ KRRNG+LKKA E+SVLCDA V++I+F+S G+++E+++ S+   +D+Y K          + +A  +    E  K+++    +Q   RH+ GE +++LN +EL  LE  L+ G+  +R+K+N+   M+  + + ME+ + QL
Sbjct:   13 NSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTG-----RRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQNDLLRMMRKKTQSMEEEQDQL 158          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 58/164 (35.37%), Postives = 97/164 (59.15%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQ--------QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMY 694
            N TNRQVTF KRR GLLKKA EL+VLCDA V +++FSS G+++EY +   S+R  I+ Y+            T  NT F +         E T++R ++ ++    R   G+ LS L   ++ +LE +LE  + +VR++K+++L  +++ + ++E  L++ N +
Sbjct:   13 NATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQ------------TVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSF 164          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 62/154 (40.26%), Postives = 90/154 (58.44%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSS-NPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  +RQVTFCKRR GLLKKA ELSVLCDA+V +I+FSS+G+L+E A N ++   ++RY+   A     PG++     Q  +Q    LR +I  +Q   R   G     +   +L  LE  LE  I ++R+ K +M+  EI+F+  +E  L+  N
Sbjct:   13 NPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGAL--QRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEAN 164          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 63/171 (36.84%), Postives = 93/171 (54.39%), Query Frame = 2
Query:  245 RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY---KKACADSSNPGSI-----------TEANTQFY--------QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNM 691
            RQVTF KRR GL KKA EL+VLCDA+VAL+VFSS G+L ++A++++   ID+Y    K    +    SI           T  N+  Y          + + L  Q+ E     R + GE L  L+ +EL+ +E  LE G+ RV   K++  + EI  ++++ IQL  +NM
Sbjct:   17 RQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENM 187          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 59/154 (38.31%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILG-EALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+ A   ++   I+RYK A  + +N       +    +QEA  L+++I  +Q   R+I G  A   +  +EL  LE  LE  +  +RS K ++++ EI+ ++ +E  L+  N
Sbjct:   13 NPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDP---KQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAAN 163          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 59/154 (38.31%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILG-EALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+ A   ++   I+RYK A  + +N       +    +QEA  L+++I  +Q   R+I G  A   +  +EL  LE  LE  +  +RS K ++++ EI+ ++ +E  L+  N
Sbjct:   13 NPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDP---KQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAAN 163          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 55/146 (37.67%), Postives = 89/146 (60.96%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRAT--IDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 664
            N TNRQVTF KRR GLLKKA EL++LCDA++ +IVFS  G++YEY++   R     DRY KA +       +     Q   QE T+++ +   ++ + R  +G+ L++L  +++ NLE ++E  + +VR +K ++L  ++  M  R
Sbjct:   13 NPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAPSTRFEEMDV----QQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMHSR 154          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 53/154 (34.42%), Postives = 90/154 (58.44%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRAT--IDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N++NRQVT+ KRRNG++KKA E+SVLCDA V++I+F+S G+++E+ + S      +D Y K          + +   +    E  +++++   +Q   RH+ GE ++TLN+KEL  LE  LE G   +++K+ E     +  M K    ++ +N
Sbjct:   13 NSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGK-----RLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEF----VRMMRKHNEMVEEEN 157          
The following BLAST results are available for this feature:
BLAST of CB290594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
M17_MAIZE2.107e-2235.90MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
MAD22_ORYSJ2.752e-2241.06MADS-box transcription factor 22 OS=Oryza sativa s... [more]
GLOB_TOBAC3.594e-2237.09Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
MAD29_ORYSJ8.007e-2235.37MADS-box transcription factor 29 OS=Oryza sativa s... [more]
MAD33_ORYSJ8.853e-2140.26MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MAD55_ORYSJ1.156e-2036.84MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MAD26_ORYSJ1.510e-2038.31MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI1.510e-2038.31MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD31_ORYSJ5.738e-2037.67MADS-box transcription factor 31 OS=Oryza sativa s... [more]
GLOB_ANTMA7.495e-2034.42Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290594 ID=CB290594; Name=CB290594; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTCTCTTCTTCTTTGTGTGTTTGTGTGTGTTTATA
TGTATATATGTGTCTAGATAGATAGATAGATAGATATATTTTTTTCTTTT
TTCTTTTTTGTCTTTTTCAGGTGTAGCTCAAGCAAGTTACCAGCAACCAT
GGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAG
GAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAA
GTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACT
GTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTG
GCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGG
TACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGC
TAACACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCC
GGGAGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACT
TTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAAT
CGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGT
TCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCT
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