CB290594

Overview
NameCB290594
Unique NameCB290594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 53/157 (33.76%), Postives = 97/157 (61.78%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQQEAT------KLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQ 679
            N  +RQVTF KRR GLLKKA+E++VLCD +VA IVFS++G L+ YA++  ++   +++Y +    S     I E    F + E +      KLR +I  ++   R+++G+ L +L  ++++ LE +++  +  +RS+K ++L+ +   +EK+  +L+
Sbjct:   13 NEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEE----FPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKKITELE 165          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 53/140 (37.86%), Postives = 91/140 (65.00%), Query Frame = 2
Query:  275 GLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            GLLKKA EL++LCDA++ +I+FSS G+++E+++   S+R  IDRY+K    S N   + + N Q Y  E T+++ +I ++Q   RH  GE L++L   E+  LE +LE  + +VRS+K ++L  +++ + ++E  L+  N
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKL---SGNCAPVYD-NQQVYC-EITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQN 136          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 54/154 (35.06%), Postives = 95/154 (61.69%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRA--TIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNE---MLLAEIEFMEKREIQLQ 679
            N++NRQVT+ KRRNG++KKA E++VLCDA+V+LI+F + G+++EY + S      +D Y+K     ++   + +A  +    E  +++++   +Q   RH+ GE +++LN KEL  LE  L  G+  + +K++E   M+    + +E+   QLQ
Sbjct:   13 NSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQK-----TSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEILRMVRKNDQILEEEHKQLQ 161          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.181e-19
Identity = 59/166 (35.54%), Postives = 96/166 (57.83%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA--NNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVR---------SKKNEMLLAEIEFMEKREI--QLQNDNM 691
            N  NR VTF KRRNGL+KKA E++VLCDA+VALI+F+S G++ +Y   +  + A +D+Y+K          + +A  +    E  +++++   +Q   RH+ GE + +LN K L  +E  +E G+ +VR          ++NE ++AE    E+R++  QLQ   M
Sbjct:   13 NANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGK-----KLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEILISKRRNEKMMAE----EQRQLTFQLQQQEM 169          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.181e-19
Identity = 52/153 (33.99%), Postives = 90/153 (58.82%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS--VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI-------LGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 664
            N TNRQVT+ KRR G++KKA EL+VLCDA+VA+I+FSS G+ +E+ + S  ++   DRY++A              T  + ++   ++R +  ++++NR++       +GE L  L F EL+ LE  ++  +  VR +K  ++  + E  +K+
Sbjct:   13 NATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQA------------IGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKK 153          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 51/153 (33.33%), Postives = 92/153 (60.13%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV--RATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI-------LGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 664
            N TNRQVT+ KRRNGL KKA EL+VLCDA+V++I+ SS G+L+E+ + S+  +   D Y+K                  +     K++ Q+R+++ +NR++       +GE+L+ LN+++L+ L   ++  +  +R +K +++  +IE  +K+
Sbjct:   13 NQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKT------------VGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKK 153          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 60/155 (38.71%), Postives = 89/155 (57.42%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--ANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI---LGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQN 682
            N TNRQVT+ KRRNGL KKA+EL+VLCDA V++I+FSS  +L+EY   N + +  +D Y+           +    TQ+ + + TK R+ +   +NL   I   LGE L  L+ +EL+ LE  +E     VR +K + L  +IE  +K+    Q+
Sbjct:   13 NQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTI-------SDVDVWATQYERMQETK-RKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQD 159          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 58/155 (37.42%), Postives = 94/155 (60.65%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSIT-EANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N+TNRQVTF KRR+G+LKKA E+SVLCDAEV +++FSS G+LY+Y +   S+   +++Y+      +N G I  +   +    E  +++++   +Q   RH+ GE L++L  KEL  +E  L+ GI  V    N+ L+   E   + +  L+++N
Sbjct:   13 NSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQ------TNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNV----NDKLMDHWERHVRTDKMLEDEN 157          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 58/156 (37.18%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQ--QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N T RQVTF KRR GL+KK  ELS+LCDA + LIVFS+ G+L E+ +  N +   IDRY       +N   + + +    Q   E   LRR+   ++   R   G  L+++   EL  LE +LE  + +VR +KNE++  ++E + ++   L+ DN
Sbjct:   13 NQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYL-----HTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDN 163          
BLAST of CB290594 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 52/153 (33.99%), Postives = 90/153 (58.82%), Query Frame = 2
Query:  233 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDN 688
            N ++RQVTF KRRNGL++KA +LSVLCDA VAL+V S+ G+LY +++ +++   +DRY K  AD        +     +Q +A         ++ ++  ++G  +  ++   L  LE  LE  +   R+KK E++L  +E ++++E  L+ +N
Sbjct:   13 NKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHAD--------DLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEEN 157          
The following BLAST results are available for this feature:
BLAST of CB290594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD20_ORYSJ1.278e-1933.76MADS-box transcription factor 20 OS=Oryza sativa s... [more]
AP32_ASAEU1.278e-1937.86MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
MADS2_PETHY1.670e-1935.06Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
PIST_ARATH2.181e-1935.54Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MAD16_ORYSJ2.181e-1933.99MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MADS1_PETHY4.858e-1933.33Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
AP3_ARATH4.858e-1938.71Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MADS2_ORYSJ6.345e-1937.42MADS-box transcription factor 2 OS=Oryza sativa su... [more]
TT16_ARATH4.112e-1837.18Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
FLC_ARATH4.112e-1833.99MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290594 ID=CB290594; Name=CB290594; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTCTCTTCTTCTTTGTGTGTTTGTGTGTGTTTATA
TGTATATATGTGTCTAGATAGATAGATAGATAGATATATTTTTTTCTTTT
TTCTTTTTTGTCTTTTTCAGGTGTAGCTCAAGCAAGTTACCAGCAACCAT
GGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAG
GAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAA
GTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACT
GTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTG
GCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGG
TACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGC
TAACACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCC
GGGAGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACT
TTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAAT
CGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGT
TCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCT
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