CB290597

Overview
NameCB290597
Unique NameCB290597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: ZIP6_ARATH (Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.446e-37
Identity = 94/237 (39.66%), Postives = 127/237 (53.59%), Query Frame = 2
Query:  143 RDKTQALKYKLAAIASILVAGAIGVYLPVL-GKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTS-PCLDEHPWADFPFTGFAAMVAAIGTLMIDAFATSYATSYYRKSHFGEAEDNVSDEEKVGEXXXXXXXXXXXXXXXXXXSIEYAGESELLRHRVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            RD  +A   K+ A+ +I +    GV+ PVL  K         K   +IK FAAGVILST  VHVLP+AFE+L        HPW DFPF G   M+ AI  L++D  A     S +     G   D   +   VG+                        E   ++ R++S VLE+GI+ HSVIIG+++G S++  TI+PL+AAL+FHQ FEG+GLGGCI QA FK+  V  + L F+
Sbjct:   18 RDGEEASHLKIVAVFAIFLTSVFGVWGPVLLAKYFHGKPLYDKAILVIKCFAAGVILSTSLVHVLPEAFESLADCQVSSRHPWKDFPFAGLVTMIGAITALLVDLTA-----SEHMGHGGGGGGDGGMEYMPVGKAVGGLEMKEGKCGADLEIQENSEEEIVKMKQRLVSQVLEIGIIFHSVIIGVTMGMSQNKCTIRPLIAALSFHQIFEGLGLGGCIAQAGFKAGTVVYMCLMFA 249          
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: ZIP9_ARATH (Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.712e-30
Identity = 92/262 (35.11%), Postives = 127/262 (48.47%), Query Frame = 2
Query:  182 IASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTSPCLDEHPW-------------------ADFPFTGFAAM---------VAAIGTLMIDAFATSYATSYYRKSHFG----------EAEDNVSDEEKVGEXXXXXXXXXXXXXXXXXXSIEYA--GESELLRHRVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            +ASIL++GA GV +P++G  +P       +    KAFAAGVIL+TGFVH+L    + L+ PCL E PW                   ADF  TG+            V ++GT +         + + R    G           AE +        E                  S  +   G    +RH V+S +LE+GI+ HS+IIGISLG S SP TI+PL+ AL+FHQFFEG  LGGC+ +A+   RG A++A FF+
Sbjct:    1 MASILISGAAGVSIPLVGTLLPL---NGGLMRGAKAFAAGVILATGFVHMLSGGSKALSDPCLPEFPWKMFPFPEFFAMVAALLTLLADFMITGYYERKQEKMMNQSVESLGTQVSVMSDPGLESGFLRDQEDGGALHIVGMRAHAEHHRHSLSMGAEGFEALSKRSGVSGHGHGHSHGHGDVGLDSGVRHVVVSQILEMGIVSHSIIIGISLGVSHSPCTIRPLLLALSFHQFFEGFALGGCVAEARLTPRGSAMMAFFFA 259          
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: IRT3_ARATH (Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 61/134 (45.52%), Postives = 80/134 (59.70%), Query Frame = 2
Query:  116 CTCDPEDDDRDKTQALKYKLAAIASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTSPCLDEHPWADFPFTGFAAMVAAIGTLMIDAFATSYATSYYRKSHFGEAEDNV 517
            C     D  RD + A   K  AIASIL+AGA GV +P++G+    L  +  +F   KAFAAGVIL+TGFVH+L    E L +PCL + PW+ FPF GF AM+AA+ TL +D       T YY +    EA ++V
Sbjct:   10 CNASESDLCRDDSAAFLLKFVAIASILLAGAAGVTIPLIGRNRRFLQTDGNLFVTAKAFAAGVILATGFVHMLAGGTEALKNPCLPDFPWSKFPFPGFFAMIAALITLFVDFM----GTQYYERKQEREASESV 139          

HSP 2 Score: 103.605 bits (257), Expect = 1.453e-21
Identity = 47/73 (64.38%), Postives = 62/73 (84.93%), Query Frame = 2
Query:  629 RHRVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            RH V+S VLELGI+ HS+IIG+SLG S+SP TI+PL+AAL+FHQFFEG  LGGCI+QA+F+++   I+A FF+
Sbjct:  232 RHIVVSQVLELGIVSHSIIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFRNKSATIMACFFA 304          
The following BLAST results are available for this feature:
BLAST of CB290597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ZIP6_ARATH1.446e-3739.66Zinc transporter 6, chloroplastic OS=Arabidopsis t... [more]
ZIP9_ARATH1.712e-3035.11Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9... [more]
IRT3_ARATH6.302e-2545.52Fe(2+) transport protein 3, chloroplastic OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290597 ID=CB290597; Name=CB290597; organism=Citrus sinensis; type=EST; length=849bp
GCACGTGGTAATTTTGGGGGTCAAATTCTTTAACATGATCACTTCCTCTC
GTAGTCTTTGCATCATTTTCTTTTGTATTCTTCTAGTACTACTTCCCAAC
ATAGTACGAGGAGAATGCACGTGCGATCCTGAAGACGATGATCGAGACAA
GACTCAAGCCTTAAAATATAAACTCGCCGCAATCGCTTCGATACTCGTAG
CCGGAGCCATCGGAGTTTACCTTCCGGTCCTCGGAAAAACTATCCCGGCA
CTAAGTCCGGAGAGAAAGATTTTCTTCCTAATCAAGGCCTTTGCCGCCGG
AGTTATATTATCAACTGGGTTCGTCCACGTGCTTCCCGACGCCTTCGAGA
ACTTAACGTCGCCCTGCCTCGATGAACATCCATGGGCGGATTTTCCGTTC
ACCGGATTTGCTGCCATGGTTGCTGCTATCGGGACTCTGATGATTGATGC
TTTTGCAACTTCTTATGCGACCTCTTATTATCGCAAGTCTCACTTTGGTG
AAGCGGAGGATAACGTATCAGATGAAGAGAAAGTTGGGGAGCATGCAGGT
CACGTGCATGTTCATACTCATGCAACTCATGGCCATGCTCATGGATCTAT
TGAATATGCTGGTGAATCGGAGCTTCTACGACACCGTGTCATATCTCTGG
TTTTGGAGTTGGGAATTCTTGTGCACTCGGTAATCATTGGAATTTCATTG
GGTACTTCTGAGAGTCCAAAAACTATTAAGCCTTTGGTTGCAGCGTTGAC
TTTTCATCAATTCTTTGAAGGAATGGGTCTTGGTGGTTGCATTACGCAGG
CAAAATTCAAGTCTCGAGGAGTCGCAATATTGGCCTTGTTCTTCTCTTT
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