CB290603

Overview
NameCB290603
Unique NameCB290603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.306e-26
Identity = 54/90 (60.00%), Postives = 75/90 (83.33%), Query Frame = -1
Query:  520 QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENERA 789
            Q++QQEA K+R QI+ +QN NRH++GE++  +  KELK+LE RLEKGI R+RSKK+E+L +EIE+M+KRE  LQN+NM+LRA++ E ERA
Sbjct:   90 QYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERA 179          
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.265e-24
Identity = 52/89 (58.43%), Postives = 73/89 (82.02%), Query Frame = -1
Query:  523 QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENER 789
            Q+YQQE+ KLR QI+ +QN N+H++G+ +S L+ KELK LE+RLEKGI ++R++KNE+L +EI +M KREI+LQNDNM LR +I E E+
Sbjct:   91 QYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQ 179          
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23
Identity = 52/88 (59.09%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  523 FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENER 786
            +YQQE+ KLR+QI+ IQN NR+++G++LS+L+ KELK +E RLEK I R+RSKK+E+LL EIE  +KREI+L N+N+YLR ++ E ER
Sbjct:   89 YYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVER 176          
The following BLAST results are available for this feature:
BLAST of CB290603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MAD21_ORYSJ2.306e-2660.00MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD13_ORYSJ1.265e-2458.43MADS-box transcription factor 13 OS=Oryza sativa s... [more]
AGL11_ARATH1.827e-2359.09Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ce04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ce04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290603 ID=CB290603; Name=CB290603; organism=Citrus sinensis; type=EST; length=792bp
TTTTTTTTTTTTTTTTTGAACAGGGCATCCTAGTCGTTCAACGTCATTGA
AAATAATAGATGAAACAAAAATTACAGAGTAGCAAGGATGAATGGAAATG
TAAGCAGGAGATATGAAATGTTTAGGGGCATAATTAATACATGAAGGAAT
CCCTTATTTAACAACATCACACAGTTAAAATTCAAACATTAGCTAGCGAA
AACCACGAGGCCTTCGTTATATGCGGGGGATTTTGAAAAAACTGGCTTTC
ACCTTTTCAATTTACGTACGTACCATACTCTCATCAATCTGATAAATGCA
AGGGAGCAAAAAGGCTTTTGCATATCTCACTGGGAAATGCAGCTATCCTG
CAATTCAAACAAGTTGAAGAGGGGGCTGATCGTCTTGGCGAGCGTACTGG
TGATTGGGTTCCAAGAGGTTTACAGGAAGGAAGTTTCGGTCATAGGGCTG
TGAAACCGCGGGCTCGTACACATGCCCTCCTCCTTGCTGCATCATGCTTT
CTGATTGCCGTTCTTGTTGGGCTCTCTCATTTTCAAATATCCTTGCTCTC
AGGTACATGTTATCATTTTGAAGCTGAATTTCCCTCTTCTCCATGAACTC
GATTTCAGCTAATAACATTTCGTTCTTCTTGGATCTGACTCTGCCGATTC
CCTTCTCAAGTCTTGCCTCAAGGTTCTTGAGCTCCTTAAAGTTTAAAGTG
CTGAGGGCCTCACCCAGAATGTGCCTGTTCAAATTCTGAATCTCCCGGAT
TTGTCTTCGTAGTTTTGTGGCTTCTTGCTGGTAAAACTGAGT
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