CB290623

Overview
NameCB290623
Unique NameCB290623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.472e-16
Identity = 42/91 (46.15%), Postives = 66/91 (72.53%), Query Frame = -1
Query:  414 RSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAP-KKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 683
            R+ TKVQK+G ++GRS+D+++++ YDEL  +L ++F  +G+L  P   +W +VYTD E D++LVGDDPW+EF   V+ I I +  EV +M+
Sbjct:  958 RTYTKVQKRG-SVGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWEEFVNCVQNIKILSSVEVQQMS 1047          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.229e-16
Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = -1
Query:  414 RSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAP-KKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 683
            R+ TKVQK+G ++GRS+D++++ +YDEL  +L  +F   G+L  P + +W +VY D E D++LVGDDPW+EF G V+ I I +  EV +M+
Sbjct:  940 RTFTKVQKRG-SVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMS 1029          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.229e-16
Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = -1
Query:  414 RSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAP-KKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 683
            R+ TKVQK+G ++GRS+D++++ +YDEL  +L  +F   G+L  P + +W +VY D E D++LVGDDPW+EF G V+ I I +  EV +M+
Sbjct:  940 RTFTKVQKRG-SVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMS 1029          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.508e-16
Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = -1
Query:  414 RSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPK-KNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 683
            R+ TKVQK+G ++GRS+D++++  YDEL  +L ++F  +G+L  P+  +W +VY D E D++LVGDDPW+EF   V+ I I +  EV +M+
Sbjct: 1037 RTYTKVQKRG-SVGRSIDVNRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMS 1126          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.194e-16
Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = -1
Query:  372 RSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKK-NWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMN 683
            R+ TKV K+G A+GRS+D+S+F+ YDEL   L ++F  +G+L   ++  W +VY D E D++L+GDDPW+EF G V+ I I + +EV +M S+     G + P N
Sbjct: 1027 RTFTKVYKRG-AVGRSIDMSQFSGYDELKHALARMFSIEGQLEERQRIGWKLVYKDHEDDILLLGDDPWEEFVGCVKCIRILSPQEVQQM-SLEGCDLGNNIPPN 1129          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.734e-15
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  414 SQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAP-KKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 743
            S  +  ++ D  +K      R+ TKVQKQG ++GRS+D++ F NY EL + +  +F   G+L  P    W +VY D E D++LVGDDPW+EF   VR I I +  EV +M+
Sbjct:  832 SMDATEYSLDRSAKPMKPPVRTYTKVQKQG-SVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMS 941          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.734e-15
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  414 SQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAP-KKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 743
            S  +  ++ D  +K      R+ TKVQKQG ++GRS+D++ F NY EL + +  +F   G+L  P    W +VY D E D++LVGDDPW+EF   VR I I +  EV +M+
Sbjct:  832 SMDATEYSLDRSAKPMKPPVRTYTKVQKQG-SVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMS 941          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.734e-15
Identity = 42/91 (46.15%), Postives = 64/91 (70.33%), Query Frame = -1
Query:  414 RSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKN-WIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 683
            R+ TKVQK G ++GRS+D++ F +Y+EL + ++ +F  +G L  P+ + W +VY D E D++LVGDDPW+EF G VR I I +  EV +M+
Sbjct:  793 RTYTKVQKTG-SVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMS 882          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.772e-14
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = -1
Query:  417 KVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAP-KKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM 671
            KV K G +LGRS+D+S+F++Y EL +EL++LF  +G+L  P +  W +V+ D E D++LVGDDPWQEF   V  I I + +EV ++
Sbjct:  770 KVYKSG-SLGRSLDISRFSSYCELRSELERLFGLEGQLEDPVRSGWQLVFVDRENDILLVGDDPWQEFANSVWCIKILSPQEVQQL 854          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.022e-14
Identity = 41/92 (44.57%), Postives = 62/92 (67.39%), Query Frame = -1
Query:  417 STRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKN-WIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM 689
            +TR+  KV K G ++GRS+D+++F+NY EL  EL Q+F   G+L  P ++ W +V+ D E D++L+GDDPW+ F   V  I I + E+V KM
Sbjct:  717 ATRTFVKVYKSG-SVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKM 807          
The following BLAST results are available for this feature:
BLAST of CB290623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
ARFS_ARATH2.472e-1646.15Auxin response factor 19 OS=Arabidopsis thaliana G... [more]
ARFP_ORYSJ3.229e-1646.15Auxin response factor 16 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSI3.229e-1646.15Auxin response factor 16 OS=Oryza sativa subsp. in... [more]
ARFG_ARATH5.508e-1645.05Auxin response factor 7 OS=Arabidopsis thaliana GN... [more]
ARFS_ORYSJ7.194e-1643.81Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSJ2.734e-1541.44Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSI2.734e-1541.44Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFE_ARATH2.734e-1546.15Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFY_ORYSJ1.772e-1447.67Auxin response factor 25 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSJ3.022e-1444.57Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290623 ID=CB290623; Name=CB290623; organism=Citrus sinensis; type=EST; length=863bp
TTTTTTTTTTGTATAAAACTTAGGCTACTTACATTAAGAGGTTGGAAAAG
AGGGGTAAACAACTATGTACAAAAAGGGATCGTTCGGGAAAGCAAAAGCT
AGAATTGCCATGCTCAAAATAGGGGGTATACATATTGAATGTATTATATG
AGTCGGACACCATATACCATGCCCAAAATTGGATAGTCATGCCGTCTACG
AGGAGGATTGACATCCATCTATTAGTTCATAATCCAAAATAGAATGCCCT
GAATATCTTCTTTCTGATGCTGCAACAAAACCTTGAACCATCAAAACCAC
ACCTAAAAATTCTCTGCATTGGATGCTAAAGGAAGTGGCTGTTTCACTTC
TTTTGCATCAATGCCGTCCCCATTCATTGGACTATCCTCACCCTTCGAGC
TAAAAGACACTGAGTTCATCTTCAGGACCTCCTCTTTTGTGTAGATGAAA
ATTTTGCGTACCATACCACAAAACTCCTGCCATGGATCATCTCCAACAAG
CATCATGTCACCCTCATCATCAGTATATACAATAATCCAATTTTTCTTGG
GAGCCATTAATTCACCATCAAATTCAAATAACTGATCCAGTTCGGCAATC
AATTCGTCATAGTTGTTGAACTTAGAAAGATCCACAGACCTACCAAGTGC
AATTCCCTGCTTTTGAACCTTAGTACAACTCCTAGTCGAACCACACTGTG
TTTTGCTACGAACATCCTTAGTGTGGGTCTGAGAAGGCTGGGACAGTTTC
TCGTGCTCATTGAAAACTTGATTATCATCTGCCAATTTTGAGCTTTTAGA
ATGGTCTGACTTTTGATCTGATTCAAATGCACGAAATTGTTGATCTAAGT
TTCCAGCCGGGTC
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