CB290623
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 2.472e-16 Identity = 42/91 (46.15%), Postives = 66/91 (72.53%), Query Frame = -1 Query: 414 RSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAP-KKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 683 R+ TKVQK+G ++GRS+D+++++ YDEL +L ++F +G+L P +W +VYTD E D++LVGDDPW+EF V+ I I + EV +M+ Sbjct: 958 RTYTKVQKRG-SVGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWEEFVNCVQNIKILSSVEVQQMS 1047
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.229e-16 Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = -1 Query: 414 RSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAP-KKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 683 R+ TKVQK+G ++GRS+D++++ +YDEL +L +F G+L P + +W +VY D E D++LVGDDPW+EF G V+ I I + EV +M+ Sbjct: 940 RTFTKVQKRG-SVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMS 1029
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.229e-16 Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = -1 Query: 414 RSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAP-KKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 683 R+ TKVQK+G ++GRS+D++++ +YDEL +L +F G+L P + +W +VY D E D++LVGDDPW+EF G V+ I I + EV +M+ Sbjct: 940 RTFTKVQKRG-SVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMS 1029
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 5.508e-16 Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = -1 Query: 414 RSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPK-KNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 683 R+ TKVQK+G ++GRS+D++++ YDEL +L ++F +G+L P+ +W +VY D E D++LVGDDPW+EF V+ I I + EV +M+ Sbjct: 1037 RTYTKVQKRG-SVGRSIDVNRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMS 1126
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 7.194e-16 Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = -1 Query: 372 RSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKK-NWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMN 683 R+ TKV K+G A+GRS+D+S+F+ YDEL L ++F +G+L ++ W +VY D E D++L+GDDPW+EF G V+ I I + +EV +M S+ G + P N Sbjct: 1027 RTFTKVYKRG-AVGRSIDMSQFSGYDELKHALARMFSIEGQLEERQRIGWKLVYKDHEDDILLLGDDPWEEFVGCVKCIRILSPQEVQQM-SLEGCDLGNNIPPN 1129
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.734e-15 Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = -1 Query: 414 SQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAP-KKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 743 S + ++ D +K R+ TKVQKQG ++GRS+D++ F NY EL + + +F G+L P W +VY D E D++LVGDDPW+EF VR I I + EV +M+ Sbjct: 832 SMDATEYSLDRSAKPMKPPVRTYTKVQKQG-SVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMS 941
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 2.734e-15 Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = -1 Query: 414 SQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAP-KKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 743 S + ++ D +K R+ TKVQKQG ++GRS+D++ F NY EL + + +F G+L P W +VY D E D++LVGDDPW+EF VR I I + EV +M+ Sbjct: 832 SMDATEYSLDRSAKPMKPPVRTYTKVQKQG-SVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMS 941
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 2.734e-15 Identity = 42/91 (46.15%), Postives = 64/91 (70.33%), Query Frame = -1 Query: 414 RSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKN-WIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 683 R+ TKVQK G ++GRS+D++ F +Y+EL + ++ +F +G L P+ + W +VY D E D++LVGDDPW+EF G VR I I + EV +M+ Sbjct: 793 RTYTKVQKTG-SVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMS 882
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.772e-14 Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = -1 Query: 417 KVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAP-KKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM 671 KV K G +LGRS+D+S+F++Y EL +EL++LF +G+L P + W +V+ D E D++LVGDDPWQEF V I I + +EV ++ Sbjct: 770 KVYKSG-SLGRSLDISRFSSYCELRSELERLFGLEGQLEDPVRSGWQLVFVDRENDILLVGDDPWQEFANSVWCIKILSPQEVQQL 854
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.022e-14 Identity = 41/92 (44.57%), Postives = 62/92 (67.39%), Query Frame = -1 Query: 417 STRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKN-WIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM 689 +TR+ KV K G ++GRS+D+++F+NY EL EL Q+F G+L P ++ W +V+ D E D++L+GDDPW+ F V I I + E+V KM Sbjct: 717 ATRTFVKVYKSG-SVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKM 807 The following BLAST results are available for this feature:
BLAST of CB290623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290623 ID=CB290623; Name=CB290623; organism=Citrus sinensis; type=EST; length=863bpback to top |