CB290630

Overview
NameCB290630
Unique NameCB290630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_RICRO (ATP synthase subunit beta OS=Rickettsia rickettsii (strain Iowa) GN=atpD PE=3 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.648e-56
Identity = 113/169 (66.86%), Postives = 135/169 (79.88%), Query Frame = 2
Query:  296 IGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            IG++ Q+I AVVDV+F     LP IL ALE  + + R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:    5 IGKITQIISAVVDVKFTNNGKLPEILNALECYNDTRRVVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTNQSTERNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKA 173          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_RICPR (ATP synthase subunit beta OS=Rickettsia prowazekii GN=atpD PE=3 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.648e-56
Identity = 113/169 (66.86%), Postives = 135/169 (79.88%), Query Frame = 2
Query:  296 IGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            IG++ QVI AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD TEGL+RG  V++TG+PI +PVG  TLGRIMNV+GEPID KG++K+     I++ AP F+ Q+TE+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:    5 IGKITQVISAVVDVKFTNNGKLPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSTEGLIRGLEVIDTGNPIRIPVGTETLGRIMNVVGEPIDGKGEIKSATISSIYKPAPDFINQSTERDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 173          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_RICAE (ATP synthase subunit beta OS=Rickettsia africae (strain ESF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.648e-56
Identity = 113/169 (66.86%), Postives = 134/169 (79.29%), Query Frame = 2
Query:  296 IGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:    5 IGKITQIISAVVDVKFTNNGELPEILNALECYNDKHRIVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTNQSTERNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKA 173          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_CAUCR (ATP synthase subunit beta OS=Caulobacter crescentus GN=atpD PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.153e-56
Identity = 110/172 (63.95%), Postives = 135/172 (78.49%), Query Frame = 2
Query:  287 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            +GA G++ Q+IGAVVD+ FD  LP IL A+E V+ +   RLV EVAQH+G+  VR IAMD TEGLVRGQ V +TG PI VPVG  TLGRIMNVIGEPIDE+G ++++    IHR+AP+F EQ    ++LVTGIKV+DL+ PY +GGKIGLFGGAGVGKTV + ELINN+AKA
Sbjct:   61 EGATGRLVQIIGAVVDIEFDGALPAILNAVETVNTATGQRLVFEVAQHLGQSTVRAIAMDATEGLVRGQPVRDTGEPIRVPVGPGTLGRIMNVIGEPIDEQGPIRSDISRTIHRDAPSFAEQTNTAEVLVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKA 232          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSM (ATP synthase subunit beta OS=Geobacter sp. (strain M21) GN=atpD PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.812e-56
Identity = 115/171 (67.25%), Postives = 132/171 (77.19%), Query Frame = 2
Query:  299 GQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            G++ QVIGAV+DV F+ G LPPI  AL V      D    LVLEVAQH+GE  VRTIAMD T+GLVRGQ+V + G  I+VPVG+ TLGRI+NVIGEP+DE G +  E    IHREAPAFV Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINN+AK
Sbjct:    6 GKISQVIGAVIDVEFEPGKLPPIYQALRVTNPAIDDQEFNLVLEVAQHLGENAVRTIAMDSTDGLVRGQQVKDMGKQISVPVGKKTLGRILNVIGEPVDEMGPIGNEKEYGIHREAPAFVNQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAK 176          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_RICCN (ATP synthase subunit beta OS=Rickettsia conorii GN=atpD PE=3 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.672e-56
Identity = 113/169 (66.86%), Postives = 133/169 (78.70%), Query Frame = 2
Query:  296 IGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP F  Q+TE  ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:    5 IGKITQIISAVVDVKFTNNGELPKILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTHQSTECNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKA 173          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_DESVM (ATP synthase subunit beta OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=atpD PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.796e-56
Identity = 109/171 (63.74%), Postives = 137/171 (80.12%), Query Frame = 2
Query:  296 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVD----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            IG++ QVIGAVVDV F  G LP IL+AL++ +     + +LV EVAQH+G+ VVRTIAMD TEGLVRG   ++TG PI VPVG+ +LGRIMNV+G P+DE G +KT+ YLPIHR AP F EQ T+ ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV++ME+INN+AK
Sbjct:    5 IGKIVQVIGAVVDVEFPSGNLPNILSALDIKNPNNSDAPQLVCEVAQHLGDNVVRTIAMDATEGLVRGMEAVDTGKPIMVPVGKASLGRIMNVVGRPVDEMGPIKTDKYLPIHRPAPEFTEQNTKVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMINNIAK 175          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_RICBR (ATP synthase subunit beta OS=Rickettsia bellii (strain RML369-C) GN=atpD PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.068e-55
Identity = 112/172 (65.12%), Postives = 136/172 (79.07%), Query Frame = 2
Query:  287 KGAIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            K  IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLE+AQH+G+  VR IAM+ TEGLVRG  V++TGSPI++PVG  TLGRIMNV+GEPID KG +K      I++ AP+F +Q+T++ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:    2 KKNIGKITQIISAVVDVKFTNKGKLPQILNALECYNDKQRIVLEIAQHIGDDTVRCIAMNSTEGLVRGMEVVDTGSPISIPVGIETLGRIMNVVGEPIDGKGKIKGSSISSIYKSAPSFTQQSTDRNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKA 173          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_RICB8 (ATP synthase subunit beta OS=Rickettsia bellii (strain OSU 85-389) GN=atpD PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.068e-55
Identity = 112/172 (65.12%), Postives = 136/172 (79.07%), Query Frame = 2
Query:  287 KGAIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            K  IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLE+AQH+G+  VR IAM+ TEGLVRG  V++TGSPI++PVG  TLGRIMNV+GEPID KG +K      I++ AP+F +Q+T++ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:    2 KKNIGKITQIISAVVDVKFTNKGKLPQILNALECYNDKQRIVLEIAQHIGDDTVRCIAMNSTEGLVRGMEVVDTGSPISIPVGIETLGRIMNVVGEPIDGKGKIKGSSISSIYKSAPSFTQQSTDRNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKA 173          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_GEOBB (ATP synthase subunit beta OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=atpD PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.068e-55
Identity = 114/171 (66.67%), Postives = 131/171 (76.61%), Query Frame = 2
Query:  299 GQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            G++ QVIGAV+DV F+ G LPPI  AL V      D    LVLEVAQH+GE  VRTIAMD T+GLVRGQ+V + G  I+VPVG+ TLGRI+NVIGEP+DE G +  E    IHREAP FV Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINN+AK
Sbjct:    6 GKISQVIGAVIDVEFEPGKLPPIYQALRVTNPAIDDQEFNLVLEVAQHLGENAVRTIAMDSTDGLVRGQQVKDMGKQISVPVGKKTLGRILNVIGEPVDEMGPIGNEKEYGIHREAPLFVNQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAK 176          
The following BLAST results are available for this feature:
BLAST of CB290630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RICRO1.648e-5666.86ATP synthase subunit beta OS=Rickettsia rickettsii... [more]
ATPB_RICPR1.648e-5666.86ATP synthase subunit beta OS=Rickettsia prowazekii... [more]
ATPB_RICAE1.648e-5666.86ATP synthase subunit beta OS=Rickettsia africae (s... [more]
ATPB_CAUCR2.153e-5663.95ATP synthase subunit beta OS=Caulobacter crescentu... [more]
ATPB_GEOSM2.812e-5667.25ATP synthase subunit beta OS=Geobacter sp. (strain... [more]
ATPB_RICCN3.672e-5666.86ATP synthase subunit beta OS=Rickettsia conorii GN... [more]
ATPB_DESVM4.796e-5663.74ATP synthase subunit beta OS=Desulfovibrio vulgari... [more]
ATPB_RICBR1.068e-5565.12ATP synthase subunit beta OS=Rickettsia bellii (st... [more]
ATPB_RICB81.068e-5565.12ATP synthase subunit beta OS=Rickettsia bellii (st... [more]
ATPB_GEOBB1.068e-5566.67ATP synthase subunit beta OS=Geobacter bemidjiensi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290630 ID=CB290630; Name=CB290630; organism=Citrus sinensis; type=EST; length=798bp
GACTATTCTCATTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTA
GACTCTTATCATCTCTCCTTCGCTCGTCTGTCCGCCGATCTCCCTCCAAA
TCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTGCCGCCACGCGCCGCGC
GTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAG
CAGCCGCCACTGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAA
GGCGGCGGTGGTAAAATCACCGATGAGTTTACTGGAAAGGGCGCGATCGG
TCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGG
GGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGTAGATCACTCCGTTCGG
TTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTAT
TGCTATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATA
CTGGCTCTCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATT
ATGAATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGA
ACATTACTTGCCCATCCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAA
CTGAACAACAGATTCTAGTCACTGGCATCAAGGTTGTTGATCTCCTTGCT
CCATACCAAAGAGGAGGGAAAATTGGGCTTTTTGGTGGTGCTGGTGTAGG
AAAAACTGTGCTTATTATGGAACTTATTAACAATGTTGCAAAGGCTCA
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