CB290639

Overview
NameCB290639
Unique NameCB290639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_TOBAC (V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.025e-44
Identity = 100/129 (77.52%), Postives = 101/129 (78.29%), Query Frame = -3
Query:  319 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 705
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK KSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:   37 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.025e-44
Identity = 100/129 (77.52%), Postives = 101/129 (78.29%), Query Frame = -3
Query:  319 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 705
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK KSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:   36 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_AVESA (V-type proton ATPase 16 kDa proteolipid subunit OS=Avena sativa GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.645e-44
Identity = 100/129 (77.52%), Postives = 101/129 (78.29%), Query Frame = -3
Query:  319 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 705
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK Y+LFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:   37 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.428e-34
Identity = 81/109 (74.31%), Postives = 81/109 (74.31%), Query Frame = -3
Query:  319 VPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 645
            VPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:    1 VPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 109          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_PLECA (V-type proton ATPase 16 kDa proteolipid subunit OS=Pleurochrysis carterae GN=VAP PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 72/125 (57.60%), Postives = 85/125 (68.00%), Query Frame = -3
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI-NPKA--KSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SGVGV+SMGVM+P+LVMKSI+PVVMAGVLGIYGLIIAVII  G+  P+     Y  F G+                G+AIGIVGDAGVRA+AQQ KL+VGM           LYGLIVG+IL+S+
Sbjct:   35 SGVGVSSMGVMKPDLVMKSIIPVVMAGVLGIYGLIIAVIIGNGVKGPEGGKPQYSSFTGFAHLAAGLACGLSGMAAGIAIGIVGDAGVRASAQQAKLYVGMVLILIFAEALGLYGLIVGLILTSK 159          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_HELVI (V-type proton ATPase 16 kDa proteolipid subunit OS=Heliothis virescens GN=VHA16 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = -3
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++  + +Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV I L ++
Sbjct:   34 SGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_MANSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Manduca sexta GN=VHA16 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = -3
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++  + +Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV I L ++
Sbjct:   34 SGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Neurospora crassa GN=vma-3 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 59/123 (47.97%), Postives = 82/123 (66.67%), Query Frame = -3
Query:  337 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRA 705
            SGVG+A+MGV+RP+L++K+IVPV+MAG++GIYGL+++V+IS  +      Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV ++++S+A
Sbjct:   35 SGVGIAAMGVLRPDLIVKNIVPVIMAGIIGIYGLVVSVLISDALT--QDHYALYTGFIQLGAGLAVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLMNSKA 155          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_ASCSU (V-type proton ATPase 16 kDa proteolipid subunit OS=Ascaris suum GN=12 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 57/121 (47.11%), Postives = 77/121 (63.64%), Query Frame = -3
Query:  343 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSS 705
            S VG++SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                G AIGIVGDAGVR  AQQP+LFVGM           LYG+IV +IL +
Sbjct:   40 SAVGISSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLRGKVTSASAGYTLDKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_AEDAE (V-type proton ATPase 16 kDa proteolipid subunit OS=Aedes aegypti GN=AAEL000291 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 61/122 (50.00%), Postives = 78/122 (63.93%), Query Frame = -3
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++   K Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV I L ++
Sbjct:   37 SGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDTPTK-YSLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 157          
The following BLAST results are available for this feature:
BLAST of CB290639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_TOBAC2.025e-4477.52V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SOLLC2.025e-4477.52V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AVESA2.645e-4477.52V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MAIZE9.428e-3474.31V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_PLECA3.837e-2757.60V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HELVI4.690e-2549.18V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MANSE6.125e-2549.18V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_NEUCR1.365e-2447.97V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ASCSU3.970e-2447.11V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AEDAE5.186e-2450.00V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290639 ID=CB290639; Name=CB290639; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTAAGAAAAAACGTTGAATAGATAATAAGACAATACATGC
ACTAGATTACCGAATAAAATTCCTTTCTGACAGTTTAAAGTTCTGCAAAA
GTGCATGGACAGCTTTGCAAACTTTATTGTTTGAAGAAACTCAATCCTAC
TACCAGAAACATGGAGTAACATACAAATGACTCGCAGAACGGCAACTTCC
ACAAGAAAGTTTGAGCAAGTGCTATCCACTTGAACCTGAGAATAATTTTA
AAAAAAATCTCGCTCCCCCAGAGTGACAAGTTATAAAAGAATACTTAGCA
ATACAAATTCCCTTCTTAATCTGCTCTGGACTGACCCGCACGTGAAGACA
AGATGATACCAACAATAAGGCCATACAGTGCAAGGGCTTCAGCGAAAATG
AGGATAAGGATCATCCCAACAAAGAGTTTTGGCTGCTGTGCATTGGCTCT
GACACCTGCGTCACCAACGATTCCAATAGCCATTCCAGCAGAAAGCCCGG
CAAGACCACAAGCCAAACCAGAGGAGAGATGAGCATAGCCATCAAAAAGG
TAATATGACTTGGCCTTGGGGTTAATCCCAGTACTGATAATAACAGCAAT
AATCAAACCATATATACCCAAAACACCAGCCATAACAACTGGCACAATCG
ACTTCATCACCAGCTCAGGCCTCATAACACCCATTGACGCCACACCAACA
CCACTCT
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